To facilitate access to the latest bioinformatics tools and resources, the OSTR has developed license agreements with a variety of bioinformatics companies that provide software packages to analyze genomic and proteomic data. These tools are meant to be accessible to the majority of CCR investigators and NCI contractor employees engaged in collaborative arrangements with NCI investigators. NCI users can submit a request at https://service.cancer.gov under scientific software to gain access to these licenses.
In addition training videos and tutorials are available for remote learning:
The CCR Office of Science and Technology Resources (OSTR) is pleased to announce the availability of institutional floating licenses of Qlucore Omics Explorer (QOE), including the NGS module, for the CCR community. The QOE is an interactive data analysis and visualization software that enables biologists to find groups, structures, variable networks and discriminating variables in large Omics data sets, including public datasets. Data types include gene expression data (NGS and arrays), DNA methylation, metabolomics, proteomics, etc. QOE supports multiple visualization plots (e.g. 3D PCA, t-SNE, heat maps with hierarchical clustering etc.), a number of statistical methods (t-test, F-test (ANOVA), etc.) and an inbuilt Gene Set Enrichment Analysis (GSEA) workbench for pathway analysis.
Partek supports next generation sequencing (NGS), microarray, and qPCR data from all major vendors including Illumina, Thermo Fisher Scientific, Affymetrix, 10x Genomics, Dolomite Bio, Drop-Seq, Fluidigm, NanoString, Lexogen, Bio-Rad, Takara, and many others.
Leverage the largest source of expert-curated pathways content.
Conducts a scientific analysis of genomic data, gene regulation, and expression generates and evaluates networks and pathways, performs extended literature searches and sequence analyses and extraction, visualizes our comprehensive genome annotation.
DNA, RNA, and protein sequence alignment, assembly and analysis software platform, integrating bioinformatic and molecular biology tools into a simple interface.
Integrated pathology pathways maps for disease mechanisms, gene-disease associations (putative biomarkers), and small molecule and biologics therapies, along with an extensive OMICS data repository.
Scalable computing solution for computationally demanding tasks like genome mapping and RNA-seq analysis.
Genetic aberration and expression analysis with an elegant and simple user interface.
SnapGene enables an easy and secure way to plan, visualize, and document everyday molecular biology procedures. With an intuitive interface, the software enables DNA sequence visualization, sequence annotation, sequence editing, cloning, protein visualization, and simulating common cloning methods. The software also enables documentation and sharing of data.
Lasergene Core Suite is a comprehensive DNA and protein sequence analysis software suite comprised of nine applications. Lasergene Core Suite is available in four configurations, each designed with different researchers in mind. This software includes functions for sequence assembly and SNP detection, automated virtual cloning and more.