To facilitate access to the latest bioinformatics tools and resources, the OSTR has developed agreements with a variety of bioinformatics companies that provide software packages to analyze genomic and proteomic data. These tools are meant to be accessible to the majority of CCR investigators and NCI contractor employees engaged in collaborative arrangements with NCI investigators.

CCR Bioinformatics/Biostatistics Toolbox – Access to software for the analysis of gene expression, promoter analysis, array CGH, genetics, signal transduction pathways, and genomics analysis:

Partek Genomics Suite

Comprehensive suite of advanced statistics and interactive data visualization specifically designed to reliably extract biological signals from noisy data. For analysis of NGS, Microarray, and other types of Genomic data.

Ingenuity Pathway Analysis (IPA)

Leverage the largest source of expert-curated pathways content.

Advaita iPathwayGuide

Next-gen expression profiling for gene and protein expression data.

Genomatix Suite and the GGA/GMS platform for Next Generation Sequencing data analysis

Conducts a scientific analysis of genomic data, gene regulation, and expression generates and evaluates networks and pathways, performs extended literature searches and sequence analyses and extraction, visualizes our comprehensive genome annotation.

GeneSpring Microarray and arrayCGH software

Analysis of gene expression, genotyping, comparative genomic hybridization, and proteomics data.

Geneious

DNA, RNA, and protein sequence alignment, assembly and analysis software platform, integrating bioinformatic and molecular biology tools into a simple interface.

Clarivate Analytics/ MetaCore and MetaRodent

Integrated pathology pathways maps for disease mechanisms, gene-disease associations (putative biomarkers), and small molecule and biologics therapies, along with an extensive OMICS data repository.

CLC Genomics Server and CLC Genomics Workbench

Scalable computing solution for computationally demanding tasks like genome mapping and RNA-seq analysis.

Biodiscovery Nexus Software

Genetic aberration and expression analysis with an elegant and simple user interface.

Elsevier Pathway Studio® Software

Text Mining and Knowledge Extraction/Pathway integration (HyNet Yeast-2 Hybrid data). ChemEffect® and DiseaseFX® modules are included in the CCR license.