Geneious R11
Geneious is a DNA, RNA, and protein sequence alignment, assembly, and analysis software platform, integrating bioinformatics and molecular biology tools into a simple interface.
- Import a wide range of formats
- Extensive pre-processing
- Reliable reference mapping
- Flexible de novo assembly
- Velvet, Maq, Bowtie on Geneious Server™
- 3D structures
- Sequences, alignments, assemblies
- Annotations, SNPs, restriction sites
- Phylogenetics trees
- Dot plot, virtual gel
- RNA secondary structure
Chromatogram Editing and Assembly
- Chromatogram assembly of Sanger data
- Import Sequencher data from.CAF file
- Assemble by name
- Call secondary peaks
- Manage sequences in 96/384 well plates
- Import chromatograms & attach to plates
- Bin and trim chromatograms
- Verify Taxonomy vs Genbank
- Genbank submission
- ClustalW (Greenbutton enabled)
- MUSCLE and MAFFT alignment
- Translation and profile alignment
- MAUVE genome alignment
- MrBayes (Greenbutton enabled)
- PAUP* interface including ModelTest
- NJ, UPGMA, and PhyML
- Bootstrapping and consensus trees
- Interactive tree viewing
- One-step multi-site Gateway Cloning
- One-step insert fragment into vector
- Virtual gel viewer
- Restriction digest
- Show non-cutting enzymes
- PCR primers and probes with Primer3
- Primers on alignments and assemblies
- Built-in primer database
- Test existing primers vs sequence
- Sequencing & multiplex primers (coming soon)
- BLAST and custom BLAST search
- Local search
- Sequence search
- Literature search
- Automated search agents
Predict, Manipulate and Annotate
- ORFs, repeats, CpG islands
- SNPs, INDELs, low/high coverage
- Protein secondary structure
- Cleavage sites, transcription factors
- Antigenic regions, Pfam domains
Access Information
You must submit a request through “NCI at Your Service” to obtain access to Geneious Pro Software.
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