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Search Results for: GDC

Total Results Found: 33

Total Results Found: 33

NCI Genomic Data Commons (GDC)
Bethesda, MD

Repositories

Trans NIH Facility

The NCI Genomic Data Commons (GDC) was established by the NCI Center for Cancer Genomics (CCG) to support the receipt, harmonization, distribution, and analysis of genomic and clinical data from cancer research programs. The GDC Read More...

GDC About the Data

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Bioinformatics

10/19/2020 - Register This webinar is intended for cancer researchers who are interested in learning more about the data that is available in the NCI Genomic Data Commons (GDC).The GDC is a unified repository that Read More...

BTEP Coding Club: Getting help regarding the GDC

Web Page

Bioinformatics

The Genomic Data Commons is well documentated. If you need help, checking the documentation is a good first step. If you need additional help with accessing, downloading, submitting, or analyzing data in the GDC, contact Read More...

BTEP Coding Club: What is the GDC?

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Bioinformatics

The Genomic Data Commons (GDC) is a repository and computational resource for cancer genomic data and associated clinical and related information. The GDC includes data from 22 programs (including TCGA), 83 projects, 69 primary sites, and 44,637 cases. Genomic Read More...

Example Use Cases for Harmonized Data in the GDC

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Bioinformatics

11/14/2022 - During this webinar, the  Genomic Data Commons ’ (GDC’s) Drs. Zhenyu Zhang and Bill Wysocki will review the different types of harmonized data that the GDC makes available for the cancer research community. The Read More...

BTEP Coding Club: TCGA data within GDC

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Bioinformatics

The TCGA data within the GDC are harmonized. Use these resources to understand more about the data, including the many codes used. Note Legacy datasets, datasets not aligned to GRCh38, and data from the original Read More...

Genomic Mutation Analysis in GDC 2.0

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Bioinformatics

04/22/2024 - Intended Audience This webinar targets researchers interested in exploring genomic mutation analysis capabilities within the recently introduced NCI Genomic Data Commons (GDC) 2.0 platform. It aims to accommodate individuals interested in analyzing genes and mutations Read More...

BTEP Coding Club: GDC Analysis Tools

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Bioinformatics

BAM Slicing Download Slice individual BAM files based on the variant, gene, position, or SNPs for individual cases/entities Download unmapped reads from a BAM file Clinical Data Analysis Visualize clinical data with histograms, survival Read More...

Genomic Data Commons Overview

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Bioinformatics

03/29/2021 - Register/Join The NCI Genomic Data Commons' (GDC's) upcoming webinar will introduce new users to its portal and library of computational resources. GDC experts will also answer questions about the GDC and genomic Read More...

NCI Genomic Data Commons Data Quality

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Bioinformatics

11/30/2020 - Register As the genomic data-specific repository within NCI's Cancer Research Data Commons (CRDC), the GDC provides cloud-based access to some of the largest and most comprehensive cancer genomic data sets as well as Read More...

Genomic Data Commons BAM Slicing

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Bioinformatics

06/26/2023 - In this webinar, University of Chicago’s Dr. Bill Wysocki will demonstrate the NCI Genomic Data Commons’ (GDC’s) Binary Alignment Map (BAM) slicing feature. If you use Read More...

Genomic Data Commons Single Cell RNA-Seq Support

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Bioinformatics

09/27/2021 - The NCI Genomic Data Commons’ (GDC) September webinar will introduce cancer researchers and bioinformaticians to the GDC's single-cell RNA-Seq (scRNA-Seq) data workflow. Single cell sequencing is a powerful platform for studying tumor heterogeneity Read More...

NCI Genomic Data Commons DNA-Seq Data Processing

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Bioinformatics

09/28/2020 - Register/Join This webinar is intended for cancer researchers and bioinformaticians who are interested in learning more about the NCI Genomic Data Commons’ (GDC’s) bioinformatics pipelines for data harmonization. The GDC DNA-Seq analysis Read More...

BTEP Coding Club: Confusing Nomenclature

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Bioinformatics

Like many large projects, there are variations of data available. Let's clear up some confusion and define the following: Harmonized data Data aligned to GRCh38 and data further proccessed using standard pipelines featuring open-source Read More...

Accessing and Downloading TCGA Data

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Bioinformatics

06/18/2024 - The Cancer Genome Atlas (TCGA) was a landmark cancer genomics program that molecularly characterized over 20,000 primary cancer and matched normal samples spanning 33 cancer types. This resulted in a massive open-source dataset that continues to Read More...

Genome Data Commons RNA-Seq Data Processing

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Bioinformatics

07/27/2020 - The GDC RNA-Seq Analysis pipeline quantifies protein-coding gene expression. RNA-Seq data is aligned to the reference genome to detect splice junctions and then re-aligned to increase quality. Gene expression quantification and fusion detection are Read More...

BTEP Coding Club: Learning objectives

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Bioinformatics

Learners will Discover public resources for accessing, analyzing, and downloading TCGA data. Learn about features of the NCI Genomic Data Commons Data Portal. Understand how to download TCGA data from the GDC.

April 2022 Newsletter

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CREx News & Updates April 2022 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Click below to learn how easy it is to navigate the CREx platform. These short videos will Read More...

NCI Proteomic Data Commons (PDC)
Rockville, MD

Collaborative

Repositories

Proteomic Data Common (PDC) represents the NCI’s largest public repository of proteogenomic comprehensive tumor datasets, essentially a Proteogenomic Cancer Atlas. It was developed to advance our understanding of how proteins help shape the risk, Read More...

Introduction to UCSC Xena

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Bioinformatics

05/26/2021 - Register Description: This webinar will highlight UCSC Xena's newest features including genome-wide differential gene expression analysis, violin plots, and a simpler way to filter and subgroup. UCSC Xena ( http://xena.ucsc.edu/ ) is Read More...

Introduction to UCSC Xena

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Bioinformatics

05/19/2020 - UCSC Xena ( xena.ucscedu/) is a web-based visual integration and exploration tool for multi-omic data and associated clinical and phenotypic annotations. Xena showcases seminal cancer genomics datasets from TCGA and the Pan-Cancer Atlas, as Read More...