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Bioinformatics
09/01/2020 - Each 90-minute microlab starts with an inspiring conversation between thought leaders from the Cancer Moonshot and creative visualization experts, followed by an opportunity to engage new colleagues from other fields in a fascinating discussion Read More...
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Bioinformatics
These steps can be used to create a publish worthy figure. For example, let's create a volcano plot of our differential expression results. A volcano plot is a type of scatterplot that shows statistical Read More...
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Bioinformatics
Understanding data distribution can help us decide appropriate downstream steps in analysis such as which statistical test to use. A histogram is a good way to visualize distribution. It divides the data into bins or Read More...
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Bioinformatics
Understanding data distribution can help us decide appropriate downstream steps in analysis such as which statistical test to use. A histogram is a good way to visualize distribution. It divides the data into bins or Read More...
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Bioinformatics
These steps can be used to create a publish worthy figure. For example, let's create a volcano plot of our differential expression results. A volcano plot is a type of scatterplot that shows statistical Read More...
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Bioinformatics
03/08/2021 - Zoom Registration Description NHGRI will host a new seminar series this year on the “Bold Predictions for Human Genomics by 2030” that are described in NHGRI’s “ Strategic Vision for Improving Human Health at the Read More...
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Confocal
Stephen Lockett, Ph.D. Director, OMAC locketts@nih.gov 301-846-5515 Valentin Magidson, Ph.D. Scientist magidsonv@mail.nih.gov 301-846-6092 Will Heinz, Ph.D. Scientist heinzwf@nih.gov 301-846-1239 OMAC Read More...
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Bioinformatics
We can modify many aspects of the figure legend using the function guide() . Let's see how that works and go ahead and customize some theme arguments. Notice that the legend position is specified in Read More...
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Bioinformatics
We can modify many aspects of the figure legend using the function guide(). Let's see how that works and go ahead and customize some theme arguments. Notice that the legend position is specified in Read More...
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Bioinformatics
How can we add text labels to some of our points? To label our top significant genes, we can add an additional geom. In this case, geom_text(). Note Here, we only want to plot Read More...
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Bioinformatics
How can we add text labels to some of our points? To label our top significant genes, we can add an additional geom. In this case, geom_text(). Note Here, we only want to plot Read More...
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Bioinformatics
Step 1: Import the data my_file <- paste0(data_path,"/","airway_deg_results.csv") airway_deg <- read.csv(my_file,check.names=FALSE,row.names=1) EnhancedVolcano Read More...
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Bioinformatics
Objectives Review the grammar of graphics template. Learn about the statistical transformations inherent to geoms. Learn more about fine tuning figures with labels, legends, scales, and themes. Learn how to save plots with ggsave() . Review Read More...
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Bioinformatics
Stat Transformations: Bar plots, box plots, and histograms Objectives Review the grammar of graphics template Learn about the statistical transformations inherent to geoms Review data types Create bar plots, box & whisker plots, and histograms. Read More...
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Bioinformatics
/* Whole document: */ body{ font-family: Times; font-size: 16pt; } Stat Transformations: Bar plots, box plots, and histograms Objectives Review the grammar of graphics template Learn about the statistical transformations inherent to geoms Review data types Create bar Read More...
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Bioinformatics
Scatter plots and plot customization Objectives Learn to customize your ggplot with labels, axes, text annotations, and themes. Learn how to make and modify scatter plots to make fairly different overall plot representations. Load a Read More...
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Bioinformatics
Objectives Review the grammar of graphics template. Learn about the statistical transformations inherent to geoms. Learn more about fine tuning figures with labels, legends, scales, and themes. Learn how to save plots with ggsave() . Review Read More...
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Bioinformatics
The Molecular Signatures Database (MSigDB) is a curated resource of thousands of gene sets by the Broad Institute. These sets were curated for use with GSEA software but are used with other tools as well. Read More...