Search Results for: Partek

NCI researchers can find instructions for accessing Partek Flow at https://bioinformatics.ccr.cancer.gov/btep/partek-flow-bulk-and-single-cell-rna-seq-data-analysis/ . But the things needed are A Biowulf (The High Performance Computing cluster) account — see here for information about Read More...

NCI researchers can find instructions for accessing Partek Flow at https://bioinformatics.ccr.cancer.gov/btep/partek-flow-bulk-and-single-cell-rna-seq-data-analysis/ . But the things needed are A Biowulf (The High Performance Computing cluster) account — see here for information about Read More...

10/26/2022 - Multiomics Data Analysis in Partek Flow® bioinformatics software which is available to NCI researchers provides a singular environment that enables the analysis and visualization of NGS data with no programming or command-line expertise. Join Read More...

11/12/2020 - THIS EVENT HAS BEEN CANCELLED Bulk RNA-Seq Analysis on Partek Flow Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=mb7dc1d31feef38ae505d7e458152cc58 You do not need to Read More...

07/14/2020 - Join us for this Webinar session, where Partek scientist will provide an overview and updates for the latest version of Partek Flow followed with a live demo for Single Cell RNA-Seq data analysis. During Read More...

NHGRI researchers should refer to https://research.nhgri.nih.gov/bi-training.shtml information on accessing Partek Flow. To BTEP's knowledge, NHGRI's Partek Flow instance is not hosted on Biowulf. Contact bioinformatics@nhgri.nih. Read More...

Once connected to the Partek Flow server, sign on to Partek Flow. Replace username with the user's own NIH user name. The password may not correspond to the user's Biowulf/NIH password as Read More...

BTEP Getting Started with Partek Flow at NIH Check out the BTEP Video Archive for recordings of previous Partek Flow trainings Information regarding Partek Flow on Biowulf Partek Flow documentations

After this class, participants will Understand the basics of Biowulf needed for using Partek Flow. Know how to sign onto the NIH Partek Flow server and become familiar with the software's user interface. Become Read More...

Partek Flow licenses are available for NCI researchers. NIH-wide Partek Flow licenses accessible through the NIH library were terminated in April 2025. To obtain a license: Get an NIH HPC account Ensure you have enough space Read More...

Partek Flow is a graphical user interface (GUI) based bioinformatics software that is dedicated to the analysis of next generation sequencing (NGS) data. Why Partek Flow? Partek Flow is compatible with all major genomic formats Read More...

Partek Flow is a graphical user interface (GUI) based bioinformatics software that is dedicated to the analysis of next generation sequencing (NGS) data. Why Partek Flow? Partek Flow is compatible with all major genomic formats Read More...

After this class, participants will Know how to acquire access to Partek Flow Become familiar with approaches for transferring data to the NIH Partek Flow server such as Globus Be able to import data into Read More...

Partek Flow Point-and-click bioinformatic software enabling biologists to create workflows for analyzing high throughput sequencing data including: DNA Bulk and single cell RNA, ATAC/ChIP CITE Spatial transcriptomics. Hosted on Biowulf so provides users more Read More...

Even though Partek Flow is hosted on Biowulf, researchers will not need Unix command line expertise to use this software. However researchers should Know that the analysis data are stored on Biowulf, the NIH high Read More...

Instructions for data transfer to the NIH Partek Flow server via command line and through the Partek Flow web GUI are also available in the class documentation. However, these will not be discussed during class Read More...

12/05/2024 - This one and a half hour online training will provide a demonstration of how to identify cell types based on statistics, visualization, and canonical markers. One Peripheral blood mononuclear cells (PBMCs) sample will be Read More...

12/03/2024 - This one and a half hour online training  will provide a demonstration of how to build a Bulk RNA-Seq data analysis pipeline using a fastq file. Partek  Flow   Read More...

11/19/2024 - Partek Flow enables scientists to construct analysis workflows for multi-omics sequencing data including DNA, bulk and single cell RNA, spatial transcriptomics, ATAC and ChIP. It is a point-and-click software hosted on Biowulf, the NIH Read More...

07/24/2024 - Partek Flow enables scientists to construct analysis workflows for multi-omics sequencing data including DNA, bulk and single cell RNA, spatial transcriptomics, ATAC and ChIP. It is hosted on Biowulf, the NIH high performance computing Read More...

Partek Flow enables scientists to build comprehensive workflows for analyzing multi-omics high throughput sequencing data including DNA and variant calling, bulk and single cell modalities for RNA, ChIP, and ATAC, spatial transcriptomics, CITE, and immune Read More...

03/05/2024 - This in-person, hands-on training will introduce participants to single cell RNA sequencing analysis using Partek Flow, a point-and-click software for analyzing high dimensional multi-omics sequencing data. At NIH, Partek Flow is hosted on the Read More...

Class documents provided by Partek

11/16/2023 - This class will provide a demonstration of how to identify cell types based on statistics, visualization, and canonical markers. One Peripheral blood mononuclear cells (PBMCs) sample will be used to illustrate a basic Single Read More...

03/08/2023 - Partek software provides a singular web based point and click environment for analyzing and visualizing high dimensional multi-omics sequencing data, making bioinformatics easily accessible to all researchers.  Partek Flow software is available to NCI Read More...

04/13/2022 - The first and the most common single cell application is single cell RNA-Seq, which enables scientists to focus on the gene expression profiles of individual cells rather than on tissue averages. Knowledge of expression Read More...

01/19/2022 - Join us for this Webinar session, where Partek scientists will show you how to use the point-and-click interface in Partek Flow to go from raw data to experimental results for DNA-Seq data analysis. Agenda: Read More...

06/30/2021 - Registration is required to join this event. If you have not registered, please do so now. Register Speaker: Uchenna Emechebe, Ph.D., Field Application Scientist, Partek Incorporated. Partek® Flow® bioinformatics software which is available Read More...

06/23/2021 - Registration is required to join this event. If you have not registered, please do so now. Register Speaker: Uchenna Emechebe, Ph.D., Field Application Scientist, Partek Incorporated Partek® Flow® bioinformatics software which is available Read More...

03/11/2021 - Meeting Link Partek® Flow® bioinformatics software (available to NCI researchers) has undergone recent updates and improvements. Join us for an online training session specifically for NCI researchers where a Partek® scientist will demonstrate new Read More...

01/28/2021 - Registration: https://cbiit.webex.com/cbiit/onstage/g.php?MTID=eb967c2ec79b87a5972c6b2ee2fc13281 Partek Flow software aids in the analysis of next generation sequencing data: RNA, small RNA, Read More...

06/24/2020 - Join us for a webinar:  How to Analyze Single Cell RNA-Seq Data: Point, Click, Done Register:  https://www.partek.com/webinar/how-to-analyze-single-cell-rna-seq-data-point-click-done/ Single cell mRNA sequencing allows for the identification of different cell subtypes Read More...

This class introduces participants to bulk RNA sequencing analysis using the point-and-click software Partek Flow. Partek Flow enables researchers to build comprehensive workflows for analyzing data derived from many sequencing modalities on the bulk and Read More...

To create a new project, click on the "Add project" button in the Partek Flow landing page. For this class, a project called hcc1395_rna_sequnencing will be created.

Participants will have an understanding of how to construct a bulk RNA analysis work flow after this class, ranging from file import to differential expression analysis and construction of visualizations. This class will not turn Read More...

If users have data stored on a personal computer, the Partek Flow web tool can be used to transfer data onto the server. Upon signing in to Partek Flow, a button labeled "Transfer files& Read More...

Upon signing onto Biowulf, users will land in the /home/user directory (again replace user with user's NIH username). This directory only has 16 GB of storage space and cannot be increased, thus users will Read More...

BTEP: ncibtep@nih.gov Biowulf: staff@hpc.nih.gov Partek: support@partek.com

After data has been transferred to the NIH Partek Flow server, the next step is to import them into a project. Sign onto Partek Flow and hit the "New project" button click to Read More...

Prior to differential expression analysis using the transcript-level expression data, filtering is recommended to remove low expressing transcripts as these may be noise. Several filter options are available in Partek Flow, please refer to the & Read More...

Copying from user's Biowulf /data directory to the uploads subfolder in PartekFlow is allowed. Be sure to be in an interactive session for this by using the sinteractive command. For instance: To transfer the Read More...

The scp commands enables users to securely transfer data to and from personal computer to a remote computer such as a high performance computing system. To transfer data from personal computer to the Partek Flow Read More...

03/05/2024 - This in-person workshop will show participants how to identify cell types based on statistics, visualization, and canonical markers. One Peripheral blood mononuclear cells (PBMCs) sample will be used to illustrate a basic Single Cell Read More...

Accessing Partek Flow at NIH and tips for data transfer Learning objectives After consulting this guide, participants will Know how to access Partek Flow at NIH. Be able to transfer data from NCI CCR Sequencing Read More...

HPC staff will create a folder called "PartekFlow" in the user's Biowulf data directory. This folder will hold all Partek Flow projects.

Accessing Partek Flow at NIH and tips for data transfer Learning objectives Instructions for accessing Partek Flow NCI researchers can find instructions for accessing Partek Flow at https://bioinformatics.ccr.cancer.gov/btep/partek-flow-bulk-and-single-cell-rna-seq-data-analysis/ . But Read More...

10/25/2023 - Partek Flow is your start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing Read More...

10/11/2023 - Partek Flow is your start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing Read More...

09/27/2023 - Partek Flow is your start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing Read More...

09/13/2023 - Partek Flow is your start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing Read More...

06/14/2023 - Partek Flow is your start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing Read More...

05/03/2023 - Partek Flow is your start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing Read More...

04/12/2023 - Partek Flow is your start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing Read More...

03/10/2022 - Attendees will learn how to use Partek Flow to identify cell subtypes using both gene and protein expression in a peripheral blood mononuclear cell (PBMC) sample using Cellular Indexing of Transcriptomes and Epitopes by Read More...

07/14/2021 - Attendees will learn how to use Partek Flow to identify cell subtypes using both gene and protein expression in a peripheral blood mononuclear cell (PBMC) sample using Cellular Indexing of Transcriptomes and Epitopes by Read More...

11/02/2020 - Attendees will learn how to use Partek Flow to identify cell subtypes using both gene and protein expression in a peripheral blood mononuclear cell (PBMC) sample using Cellular Indexing of Transcriptomes and Epitopes by Read More...

05/19/2020 - The class will start with an overview of Partek Genomics Suite with Pathway and followed with the hands-on training on Illumina 450K Methylation array data. The workflow can also be used on HumanMethylation27 (27K) Read More...

12/11/2019 - Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow Please bring your own computer for this hands-on training. If you need to borrow a computer please email ncibtep@nih.gov Hands Read More...

08/28/2019 - Please bring your computer with Partek Genomics Suite to this hands-on workshop. You'll need to submit a request through “NCI at Your Service” to obtain the access to this software. Partek will demonstrate Read More...

11/06/2018 - RNA-Seq Data Analysis in Partek Flow Please bring a laptop to this class - or let us know if you need to borrow one. Please printout and bring the handout from the class website. Read More...

09/19/2018 - TOPIC: Single Cell RNA-Seq Data Analysis in Partek Flow Partek (partek.com) Flow software provides a point-and-click interface for analysis of next -gen sequencing data. Users can customize analysis pathways for sequence alignment, differential Read More...

04/26/2017 - The CCR Bioinformatics Training and Education Program (BTEP) is pleased to organize a workshop on Partek Genomics Suite for scientists at NCI-Frederick. Partek ® Genomics Suite ® is a versatile scientific software with an easy-to-use graphical Read More...

03/29/2017 - The CCR Bioinformatics Training and Education Program (BTEP) is pleased to organize a workshop on Partek Flow for scientists at NCI-Frederick . Partek Flow software is designed specifically for the analysis needs of next generation Read More...

This class will not turn participants into expert bioinformaticians or Partek Flow users. However, concepts learned can be applied to other sequencing type using Partek Flow and provides a foundation for continual learning. After this Read More...

To access the NIH Partek Flow server, go to https://partekflow.cit.nih.gov/flow and enter the user's NIH username and then password. Note User may have selected a password different than that Read More...

Log into Partek Flow at https://partekflow.cit.nih.gov/flow . This example will use the nci_ccr_sf_example_scrna project, so click on it. Click on "Add data". Select Single cell, Read More...

11/10/2022 - Participants will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow. By completing this session, attendees will acquire Read More...

11/04/2022 - Participants will learn how to use the point-and-click interface in Partek Flow for RNA-Seq analysis to go from raw data to experimental results. By completing this session, attendees will acquire a working knowledge of Read More...

08/24/2022 - Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=m875b987cd37fafd4c24a84b7296aadb0 This webinar will demonstrate new features for creating publication ready RNA-Seq Graphs using the easy Point-and-Click Read More...

06/15/2022 - Partek® Flow® bioinformatics software is available to all NCI researchers.  Join us for an online training session specifically for NCI researchers where a Partek® scientist will demonstrate how to perform the advanced and in-depth Read More...

05/18/2022 - Powerful and Intuitive Gene Expression Visualization Tools to Interpret Biological Signals – Bulk and Single Cell Data The increasing use of genomic technologies, such as RNA-Seq and single cell RNA-Seq, to assess gene expression patterns Read More...

04/14/2022 - Participants will learn how to perform analysis for ATAC-Seq/ChIP-Seq data in Partek Flow. By completing this session, attendees will acquire a working knowledge of the tools available to NIH researchers for the start Read More...

04/07/2022 - During the first part of the session attendees will learn how to use Partek Flow to perform special transcriptions by overlaying cell location information and histological images on single cell RNA-Seq data using 10X Read More...

03/01/2022 - Participants will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow. By completing this session, attendees will acquire Read More...

01/20/2022 - Participants will learn how to use the point-and-click interface in Partek Flow for RNA-Seq analysis to go from raw data to experimental results. By completing this session, attendees will acquire a working knowledge of Read More...

07/20/2021 - Register During the first part of the session attendees will learn how to use Partek Flow to perform special transcriptions by overlaying cell location information and histological images on single cell RNA-Seq data using 10 Read More...

07/07/2021 - Participants will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow. By completing this session, attendees will acquire Read More...

03/05/2021 - Register Participants will learn how to perform analysis for ATAC-Seq/ChIP-Seq data in Partek Flow. By completing this session, attendees will acquire a working knowledge of the tools available to NIH researchers for the Read More...

03/04/2021 - Register Participants will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow. By completing this session, attendees will Read More...

03/02/2021 - Register Participants will learn how to use the point-and-click interface in Partek Flow for RNA-Seq analysis to go from raw data to experimental results. By completing this session, attendees will acquire a working knowledge Read More...

11/12/2020 - During the first part of the session attendees will learn how to use Partek Flow to perform special transcriptions by overlaying cell location information and histological images on single cell RNA-Seq data using 10X Read More...

05/21/2020 - Students will learn how to use the point-and-click interface in Partek Flow to go from raw data to experimental results for RNA-Seq analysis. For example: import data from .fastq files; perform QA/QC (Pre-alignment Read More...

05/21/2020 - Students will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow. For example: import data; filter cells using Read More...

05/19/2020 - Students will learn how to use the point-and-click interface in Partek Flow to go from raw data to experimental results for DNA-Seq and ATAC/ ChIP-Seq data analysis.The class will start with NGS data Read More...

10/23/2019 - Please note class will start at 1:30 PM and end at 3:30 PM.  Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow Please bring your own computer for this hands-on training. If you Read More...

10/23/2019 - Please note class will start at 10 AM and end at 12 noon. Thank you! Attention: This class is limited to 28 people due to the size of the room. Please add your name to the waiting Read More...

08/28/2019 - Here is the handout used for todays Single Cell RNA Seq analysis class: PartekFlowSingleCellRNA-SeqTrainingHandout_August2019 Attention: This class is limited to 28 people due to the size of the room. There is another Single Cell Read More...

12/13/2017 - PLEASE NOTE:  This workshop is a  BYOC  ( Bring Your Own LapTop Computer ) class, and  requires installation of Partek Genomics Suite on your laptop ahead of the workshop. Government issued or personal computers are permitted. Read More...

02/05/2013 - This training session will focus on Gene Expression analysis and the rich set of results possible from RNA-Seq based studies. In addition to differential gene expression, researchers also have the opportunity to discover SNPs, Read More...

11/13/2012 - The ChIP-Seq data analysis session will specifically focus on visualization of mapped reads, peak detection, motif discovery (find both novel motif and known motif), annotate enriched regions with overlapping genes or database.   The topics Read More...

OSTR provides CCR investigators with access to a variety of software licenses for genomic, proteomic, pathway analysis and data visualization tools. These software are funded by OSTR and made available at no cost to CCR Read More...

The goals of the Bioinformatics Training and Education Program within NCI/CCR are: To make researchers aware of the bioinformatics resources available to them, To provide training and guidance on these resources regularly and at Read More...

CREx News & Updates January 2022 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Site Spotlight NCI ANTIBODY CHARACTERIZATION LABORATORY (ACL) The ACL specializes in rigorously validating antibodies for signaling and Read More...