Rockville, MD
Trans NIH Facility
NISC’s role within NHGRI, and more broadly across NIH, aims to advance genome sequencing and its many applications, with a goal not simply to produce sequence data, but to produce the infrastructure required to Read More...
Web Page
Bioinformatics
There are many defaults when generating a plot with ggplot2, but almost everything you see can be customized. Here we can see: Assigned colors A legend axis titles a plot background tick marks The assignment Read More...
Web Page
Bioinformatics
To plot using Seaborn, start the command with seaborn followed by the plot type, separated by a period. seaborn.plot_type This section will use Seaborn's scatterplot to explore how to work with and Read More...
Web Page
Bioinformatics
There are many defaults when generating a plot with ggplot2, but almost everything you see can be customized. :::: {.columns} ::: {.column width="30%"} Here we can see: Assigned colors A legend axis titles a plot Read More...
Web Page
Bioinformatics
To plot using Seaborn, start the command with seaborn followed by the plot type (where plot type can be any plot, for instance if the user wants a scatter plot then the command would be Read More...
Web Page
Bioinformatics
To create the volcano plot initiate it with the ggplot command, which creates a blank plotting canvas. Enclosed in the ggplot command are the arguments and these are as follows. Data table to generate a Read More...
Web Page
Bioinformatics
To create the volcano plot initiate it with the ggplot command, which creates a blank plotting canvas. Enclosed in the ggplot command are the arguments and these are as follows. Data table to generate a Read More...
Web Page
Bioinformatics
The example below will use Python code to demonstrate the utility of Jupyter Notebook for keeping code, output, and analysis steps all in one place. First, the import command of Python will be used to Read More...
Web Page
Bioinformatics
The example below will use Python code to demonstrate the utility of Jupyter Notebook for keeping code, output, and analysis steps all in one place. First, the import command of Python will be used to Read More...
Web Page
Bioinformatics
Let's return to our plot above. Is there a relationship between treatment ("dex") and the number of transcripts or total counts? #adding the color argument to our mapping aesthetic ggplot(data=sc) + Read More...
Web Page
Bioinformatics
Let's return to our plot above. Is there a relationship between treatment ("dex") and the number of transcripts or total counts? #adding the color argument to our mapping aesthetic ggplot(data=sc) + Read More...
Web Page
Bioinformatics
The next exercise is to practice creating a scatter plot on a biologically relevant dataset. Namely, the differential expression results from the hbr and uhr RNA sequencing study will be used to create a scatter Read More...
Web Page
Confocal
HALO HALO is a powerful 2D image analysis tool with AI capabilities to perform annotations and analysis on bright-field and immunofluorescent images for digital pathology and numerous other applications. It offers a set of algorithms Read More...
Web Page
Bioinformatics
The next exercise is to practice creating a scatter plot on a biologically relevant dataset. Namely, the differential expression results from the hbr and uhr RNA sequencing study will be used to create a scatter Read More...
Web Page
Bioinformatics
The nors data frame is not sorted. The .sort_values() attribute can be used to do this. Inside .sort_value(), the option by will be used to sort the NORS data by the variable(s) Read More...