Frederick , MD
Core Facility
The Frederick Sequencing and Genomics Core (FSGC) was established through the integration and consolidation of the former Sequencing Facility (SF) and the Genomics Technology Laboratory (GTL). The new FSGC eliminates redundancy and provides cutting edge Read More...
Rockville, MD
Trans NIH Facility
NISC’s role within NHGRI, and more broadly across NIH, aims to advance genome sequencing and its many applications, with a goal not simply to produce sequence data, but to produce the infrastructure required to Read More...
Web Page
Bioinformatics
Illumina PacBio Oxford Nanopore 10X Genomics
Web Page
Bioinformatics
Long read platforms by PacBio and Oxford Nanopore are beconing more popular and offer significant advantages over short read technologies in certain circumstances.
Web Page
Bioinformatics
04/21/2021 - Registration: https://cbiit.webex.com/cbiit/onstage/g.php?MTID=e51f19be5660107b4b92118dc48be1781 Presenter: Kevin Kendal PhD CEO of MacVector Description: This workshop will focus on the analysis of Next Read More...
Web Page
Bioinformatics
10/28/2020 - Register The Sequencing Facility (https://ostr.cancer.gov/resources/fnl-cores/sequencing-facility) is a second and third generation high-throughput sequencing core established by the Center for Cancer Research (CCR). Sequencing Facility’s (SF’s) primary Read More...
Web Page
Bioinformatics
There are two main Core facilities providing DNA sequencing services for CCR scientists. CCR Sequencing Facility Located at the ATRF in Frederick provides production quality high throughput sequencing service to the CCR community. Their service Read More...
Web Page
Bioinformatics
FASTQ/FQ FASTA/FNA/FA SAM BAM VCF TXT BAS.H5 BASX.H5 AB ABI AB1 SCF PHD SFF GFF GTF BED WIGGLE Tracks/annotations from the UCSC Genome Browser and COSMIC database We can Read More...
Web Page
Bioinformatics
Long reads sequencing analysis using Qiagen CLC Genomics Workbench Thursday, February 12, 2026, 1 PM - 2:30 PM (eastern) This Qiagen hosted virtual training introduces analysis of long reads generated by Oxford Nanopore and PacBio. Learn more and sign Read More...
Web Page
Bioinformatics
The two methods used for denoising on QIIME 2 include: DADA2 - Uses a run specific error profile - Unclear how an incomplete run profile would impact results - There is a method available for Pacbio Read More...
Web Page
Bioinformatics
10/24/2023 - In this session, we will provide an overview of the Next-Generation Sequencing (NGS) capabilities and applications. We will present the workflows and analyses for Illumina short-read, PacBio, and Oxford Nanopore long-read sequencing on Frederick Read More...
Web Page
Bioinformatics
Generating the Data General Rules for Sample Preparation Ignoring these simple guidelines will greatly increase the chances that your data will be unanalysable and/or your experiment unpublishable. Prepare all samples at the same time Read More...
Web Page
Bioinformatics
Biostar Class - Sequencing Instruments Below are a list of links and resources mentioned in the BIOSTAR Sequencing Instruments class given on 06/10/20 and 06/11/20 Sequencing Technologies - Company Web Sites Illumina PacBio Oxford Nanopore 10X Genomics Read More...
Web Page
Bioinformatics
04/21/2021 - Register Description: MacVector is a sequence analysis application for macOS computers that provides users with a variety of tools and functions to simplify the analysis, manipulation, assembly, and documentation of DNA and protein sequences. Read More...
Web Page
Bioinformatics
01/14/2021 - Registration: https://cbiit.webex.com/cbiit/onstage/g.php?MTID=e968a58127acdb59b961e2ef13865c7ad Description: This workshop will focus on the analysis of Next Generation Sequencing (NGS) data using the Read More...
Web Page
Bioinformatics
BTEP strives to maintain links to resources that should be of interest to CCR Bioinformatics Community. Some of the resources to will be accessible through more than one of these lists, but since the lists Read More...
Web Page
Bioinformatics
This page uses content directly from the Biostar Handbook by Istvan Albert. Learn: FASTQC for assaying quality of sequence reads MultiQC for combining multiple FASTQC reports into one report Trimmomatic for removing sequence data based Read More...
Web Page
Bioinformatics
This page uses content directly from the Biostar Handbook by Istvan Albert. Learn: FASTQC for assaying quality of sequence reads MultiQC for combining multiple FASTQC reports into one report Trimmomatic for removing sequence data based Read More...
Web Page
Bioinformatics
06/10/2021 - Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=mc11b56eb7f7e732aa44c78427402dd2e Abstract: Long read, single molecule sequencing from Pacific Biosciences (PacBio) and Oxford Nanopore are revolutionizing Read More...
Web Page
Bioinformatics
There are a number of core facilities available to NCI researchers. See more information from the Office of Science and Technology Resources. We most commonly see data from the following cores: CCR Sequencing Facility (CCR-SF) Read More...
Web Page
Bioinformatics
Lesson 3: Creating a feature table Lesson Objectives Check for primers Generate an ASV count table and representative sequence file Understand the difference between OTU picking and denoising The two primary files that will be used Read More...