NATIONAL CANCER INSTITUTE - CANCER.GOV

Search Results for: correlation

Total Results Found: 59

Total Results Found: 59

BTEP Coding Club: Methods for Correlation

Web Page

Bioinformatics

Correlation analysis refers to a group of statistical methods used to discover the relationship between two or more variables of interest. Common methods of correlation are included in the table below. Methods R function Description Read More...

Microscopy Protocols

Web Page

Confocal

FRET (Fluorescence Resonance Energy Transfer) FRET is a light microscopy method for detecting protein‐protein interactions within intact cells. FCS (Fluorescence Correlation Spectroscopy) Fluorescence correlation spectroscopy (FCS) is a correlation analysis of fluctuation of the Read More...

BTEP Coding Club: TCGA correlation example

Web Page

Bioinformatics

Scatter plots are useful to visually inspect similarity (correlation) between variables. For example, we can see how closely two replicates from the TCGA lung adenocarcinoma data set correlate. luad<-readr::read_csv(" Read More...

Microscopy Techniques

Web Page

Confocal

Multicolor imaging Fluorescence imaging is used for protein localization and colocalization in 3D. Multi-color imaging is necessary to observe colocalization of several proteins in the same cell. Many fluorescent proteins are now available for multi-color Read More...

Contact Us

Web Page

Confocal

Our Team Tatiana S. Karpova Ph.D.Core Headkarpovat@nih.govBuilding 41, Room C615240-760-6637 David A. Ball Ph.D.Core Biologistballa@nih.govBuilding 41, Room B114D240-760-6577 Mohamadreza Fazel, Ph.D.Core Biologistmohamadreza. Read More...

Data Visualization with R: Applications of dendrograms

Web Page

Bioinformatics

Dendrograms are used in phylogenetics to help visualize relatedness of or dissimilarities between species. In RNA sequencing, dendrogram can be combined with heatmap to show clustering of samples by gene expression or clustering of genes Read More...

Data Visualization with R: Applications of dendrograms

Web Page

Bioinformatics

Dendrograms are used in phylogenetics to help visualize relatedness of or dissimilarities between species. In RNA sequencing, dendrogram can be combined with heatmap to show clustering of samples by gene expression or clustering of genes Read More...

BTEP Coding Club: Background on heatmap

Web Page

Bioinformatics

A heatmap represents numerical data on a color scale and is often combined with a dendrogram to facilitate visualization of clusters and to identify patterns among study variables. For instance, they can be used to Read More...

Bioinformatics for Beginners 2022: Visualization

Web Page

Bioinformatics

Here are a number of visual elements that are typically produce from RNASEQ data. Normalization plots PCA and Volcano plots Scatter plot and correlation coefficients Heat Maps IGV Traces Resources

Bioinformatics for Beginners 2022: Visualization

Web Page

Bioinformatics

Visualization Here are a number of visual elements that are typically produce from RNASEQ data. Normalization plots PCA and Volcano plots Scatter plot and correlation coefficients Heat Maps IGV Traces Resources

CCR Collaborative Bioinformatics Resource (CCBR)
Bethesda, MD

Collaborative

The CCR Collaborative Bioinformatics Resource (CCBR) is a centrally funded resource group which provides a mechanism for CCR researchers to obtain many different types of bioinformatics assistance to further their research goals. The group has Read More...

Past Seminars

Web Page

Confocal

2024 Date: Tuesday, October 15, 2024 Time and Location: 11 am EST, ZOOM (INVITATION BY LMIG LIST SERVER) Speaker: Dr. Diego Presman (U Buenos Aires) Title: “Insights on Glucocorticoid Receptor Activity Through Live Cell Imaging” Summary: Eucaryotic transcription factors ( Read More...

Introduction to R: Part 3 – Data Analysis

Web Page

Bioinformatics

09/13/2024 - This course provides an introduction to data analysis using R, focusing on conducting various statistical tests and generating commonly used statistical regression models. Participants will learn how to perform hypothesis testing, calculate descriptive statistics, Read More...

cBioPortal for Cancer Genomics

Web Page

Bioinformatics

10/12/2021 - Speaker :  Tali Mazor, Ph.D., Scientist, Knowledge Systems Group, Dana-Farber Cancer Institute Tali Mazor, Ph.D., of the Dana-Farber Cancer Institute will discuss the functions and features of the cBioPortal for Cancer Genomics. This Read More...

BTEP Coding Club: Additional tutorials GGpubr

Web Page

Bioinformatics

If you are interested in ggpubr, you may find the following tutorials useful: http://www.sthda.com/english/articles/24-ggpubr-publication-ready-plots/77-facilitating-exploratory-data-visualization-application-to-tcga-genomic-data/. https://malucalle.github.io/statistical-pills/nice-plots-with-r.html. https://documentation1458.rssing.com/chan-49683810/all_p8. Read More...

BTEP Coding Club: Learning objectives

Web Page

Bioinformatics

Explore the package ggpubR Learn about statistical functions accessible within the ggpubr package. Learn about options for visualization including how to include comparison brackets, p-values, and other statistical results Warning This tutorial is NOT meant Read More...

Research

Web Page

CRTP

No summary available.

Software & Techniques

Web Page

Confocal

Software Image Acquisition Commercial imaging systems of LRBGE Optical Microscopy Core are controlled by acquisition software specifically designed for the appropriate microscope, such as ZEN (Zeiss confocal microscopes), Nikon Elements (Nikon), Imspector (Abberior). Custom-built HILO Read More...

Microbiome Analysis with QIIME2: Beta Diversity

Web Page

Bioinformatics

Lesson 6 . Learning Objectives Introduce several beta diversity metrics Discover different ordination methods Learn about statistical methods that are applicable Beta diversity Beta diversity is between sample diversity. This is useful for answering the question, how Read More...

Bulk RNA-Seq Data Analysis in Partek Flow

Web Page

Bioinformatics

06/23/2021 - Registration is required to join this event. If you have not registered, please do so now. Register Speaker: Uchenna Emechebe, Ph.D., Field Application Scientist, Partek Incorporated Partek® Flow® bioinformatics software which is available Read More...

ChIP-Seq Data Analysis Workshop (2-day)

Web Page

Bioinformatics

11/18/2014 - Day 1 - AM (9:30-12:30)  Introductory Lecture ( Peter FitzGerald, PhD - CCR, NCI ) Introduction Historical Perspective and Technical Variations Experimental methodology Comparison to ChIP-Chip Data Analysis Experimental Design Quality Control  Peak Calling (Different methodologies) Major Read More...

BTEP Coding Club: Statistical Integration

Web Page

Bioinformatics

ggpubr allows us to easily incorporate additional information into our plots (e.g., mean, individual case information, etc.). Where this package really shines is its ability to easily include the results of common statistical tests. Read More...

Instrumentation

Web Page

Confocal

ZEISS Elyra 7 with Lattice SIM² Type: Wide-field structured illumination microscope Capabilities: Super resolution 2D and 3D imaging of live or fixed cells Apotome SIM: 170 nm lateral, 450 nm axial Apotome SIM2: 140 nm lateral, 300 nm axial Lattice Read More...

BTEP Video Archive of Past Classes

Web Page

Bioinformatics

Listed below are the video recordings of past BTEP events (classes, seminars, workshops). Videos are hosted on various servers and may play slightly differently. Some videos may be downloaded for local viewing. Recorded Videos of Read More...

Data Visualization with R: Lesson5

Web Page

Bioinformatics

Visualizing clusters with heatmaps Objectives Introduce the heatmap and dendrogram as tools for visualizing clusters in data. Learn how to work with the package pheatmap . Learn how to save a non-ggplot2 plot. Introduce ggplotify to Read More...

Stepping into the Regulome: ChIP-Seq/ENCODE Data Analysis

Web Page

Bioinformatics

04/17/2017 - Probing DNA-Protein Interactions This 2-day workshop, which includes both lecture and hands-on components, will teach the basic concepts and practical aspects of ChIP-Seq data analysis. Topics to be covered include: experimental design; read alignment; Read More...

Workshop on Analysis of ChIP-Seq Data

Web Page

Bioinformatics

05/16/2016 - This 2-day course, which includes both lecture and hands-on components, will teach the basic concepts and practical aspects of ChIP-Seq Data Analysis. There will also be a talk on ENCODE and a comprehensive discussion Read More...

Media

Web Page

CRTP

No summary available.