NATIONAL CANCER INSTITUTE - CANCER.GOV

Search Results for: BHD Exons 1-14

Total Results Found: 111

Total Results Found: 111

CLIA Molecular Diagnostics Laboratory
Frederick, Maryland

Core Facility

CLIA-Certified Technologies Offered: Fragment Analysis for Micro-satellite Instability Detection, Pharmacoscan Array for Pharmacogenomics, Mutation Detection for PCR and Sanger Sequencing, DNA extraction from whole blood, saliva, FFPE tissues, buccal swabs, nails, hair, PBMCs, buffy coats, Read More...

Bioinformatics for Beginners 2022: Lesson 14 Practice

Web Page

Bioinformatics

Lesson 14 Practice Objectives Here, we will practice using the Integrative Genome Viewer (IGV) to visualize the hcc1395 RNA sequencing alignment results. About the data and launching IGV We were introduced to the hcc1395 RNA sequencing Read More...

Data Wrangling with R: Introducing the SummarizedExperiment

Web Page

Bioinformatics

The SummarizedExperiment class and the inherited class RangedSummarizedExperiment are available in the R package SummarizedExperiment . SummarizedExperiment is a matrix-like container where rows represent features of interest (e.g. genes, transcripts, exons, etc.) and columns represent Read More...

Missing Values and Data Transformations

Web Page

Bioinformatics

11/14/2023 - This talk will cover how to maximize the utility of your data by handling missing values and performing mathematical transformations. We will cover best practices, common pitfalls, and touch on data standardization methods. This Read More...

NHLBI Murine Phenotyping Core
Bethesda, MD

Core Facility

The NHLBI Murine Phenotyping Core carries out physiologic and behavioral testing in a diversity of mouse models for NHLBI and other NIH institutes. Established Technologies: Cardiovascular Phenotyping, Metabolic Phenotyping, Pulmonary Phenotyping, Behavioral Phenotyping, Exercise Physiology, Read More...

December 2021

Web Page

CREx News & Updates December 2021 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Site Spotlight FACILITY HIGLIGHTS Learn more about services from the STRIDES Initiative. VIEW STRIDES INITIATIVE NIH Cores Read More...

NCI CCR Clinical Research Correlatives Core
Bethesda, MD

Collaborative

The NCI Clinical Research Correlatives Core provides non-CLIA-certified spectral flow cytometric assays to support clinical trials conducted in the CCR. The core specializes in immunophenotyping and immune monitoring assays. Established Technologies Spectral flow cytometry (Cytek), Read More...

AI Club: Gene Set Analysis with Large Language Models

Web Page

Bioinformatics

04/14/2025 - Gene set analysis (GSA) is essential in genomic research, yet traditional methods often lack transparency and produce contextually irrelevant results, making interpretation challenging. While large language models (LLMs) offer a promising solution for result Read More...

Introduction to R and RStudio

Web Page

Bioinformatics

01/14/2025 - This one-hour online training will cover a basic overview of the functionality of R programming language and RStudio. R is a programming language and open-source environment for statistical computing and graphics. & Read More...

Introduction to Survival Analysis

Web Page

Bioinformatics

01/14/2025 - In this talk, we will cover the basics of survival analysis as a statistical methodology developed for censored data. Special emphasis will be on visualizing survival data, comparing survival-time distributions for subject groups, and Read More...

ITCR Webinar: Introduction to the Cancer Proteome Atlas

Web Page

Bioinformatics

09/13/2024 - Reverse-phase protein arrays (RPPAs) represent a powerful functional proteomic approach to elucidate cancer-related molecular mechanisms and develop novel cancer therapies.   To facilitate community-based investigation of the large-scale protein expression data generated by Read More...

RNAseq Data Analysis in Qlucore

Web Page

Bioinformatics

08/14/2024 - In this introduction session, Dr. Yana Stackpole will discuss biologist-friendly ways to import and analyze RNAseq data in Qlucore, followed by integrated GSEA for biological interpretation.   She will pick a public cancer-related Read More...

Effect Size, p-value, and Accuracy

Web Page

Bioinformatics

05/14/2024 - This presentation will explain the difference between the mean and standard deviation of a set of values and the standard error of the mean. The parameters involved in comparing two normally distributed populations relative Read More...

Zoom-In Consult for Biowulf Users

Web Page

Bioinformatics

02/14/2024 - For inquires send email to staff@hpc.nih.gov Meeting ID: 160 198 9146 Passcode: 083637 Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited Read More...

Web Page

Bioinformatics

Love Data Week 2024 is quickly approaching! What is Love Data Week?  Love Data Week is an international week of celebrating all things data related, with an emphasis on data management, sharing, and security. Read More...

Data Wrangling with R: Excluding columns

Web Page

Bioinformatics

We can select all columns, leaving out ones that do not interest us using a - sign. This is helpful if the columns to keep far outweigh those to exclude. We can similarly use the ! Read More...

Data Wrangling with R: Accessors

Web Page

Bioinformatics

As you can see from the image, there are several accessor functions to access the data from the object: assays() - access matrix-like experimental data (e.g., count data). Rows are genomic features (e.g., Read More...

Data Wrangling with R: Challenge data load

Web Page

Bioinformatics

Load in a tab delimited file (file_path= "./data/WebexSession_report.txt") using read_delim() . You will need to troubleshoot the error message and modify the function arguments as needed. {{Sdet}} Solution } library ( Read More...

Data Wrangling with R: We can reorder using select().

Web Page

Bioinformatics

For readability, let's move the transcript column to the front. #you can reorder columns and call a range of columns using select(). ex3 ## 1 TSPAN6 hg38 TRUE -0.390 5.06 32.8 0.000312 0.00283 untrt ## 2 DPM1 hg38 TRUE 0.198 4.61 6.90 0.0281 0.0770 untrt ## 3 SCYL3 hg38 Read More...

Data Wrangling with R: Practice problems

Web Page

Bioinformatics

Which of the following will throw an error and why? 4 _ chr :1:2: unexpected input ## 1: 4_ ## ^ . 4 chr :1:3: unexpected symbol ## 1: .4chr ## ^ {{Edet}} Create the following objects; give each object an appropriate name (your best guess at what name to Read More...

Data Wrangling with R: Lesson 2: Help Session

Web Page

Bioinformatics

This is our first coding help session. We have designed some practice problems to get you acquainted with using R before beginning to wrangle in our next lesson. Practice problems Which of the following will Read More...

Data Wrangling with R: Saving an R object

Web Page

Bioinformatics

S4 objects store complex information that isn't necessarily simple to save. If you intend to work with the object further, try using saveRDS . saveRDS(se, "airways.rds") #save the object Note saveRDS() Read More...

Capabilities of the NIDAP platform for Transcriptomic Analysis

Web Page

Bioinformatics

12/14/2023 - NIDAP , the NIH Integrated Data Analysis Platform, is a cloud-based, collaborative data aggregation and analysis platform that hosts user-friendly bioinformatics workflows and other component analysis and visualization tools. The NCI CCR Collaborative Bioinformatics Resource ( Read More...

Human Pangenome Reference

Web Page

Bioinformatics

11/14/2023 - Dr. Ting Wang is a Sanford C. and Karen P. Loewentheil Distinguished Professor of Medicine at the McDonnell Genome Institute, Washington University School of Medicine in St. Louis. Dr. Wang’s lab Read More...

Optimizing MATLAB and Accelerating Code

Web Page

Bioinformatics

09/14/2023 - In this 90-minute session, participants will learn to improve and optimize their MATLAB code to boost execution speed by orders of magnitude. The course covers common pitfalls in writing MATLAB code, explores the use Read More...

Bioinformatics for Beginners 2022: Visualization

Web Page

Bioinformatics

Can we generate an expression heatmap? {{Sdet}} Solution{{Esum}} Rscript $CODE/create_heatmap.r {{Edet}} Next, let's generate the Principal Components Analysis plot. But first, we need to convert the counts.csv and design. Read More...

NIH Clinical Center Positron Emission Tomography (PET)
Bethesda, MD

Core Facility

Trans NIH Facility

The PET Department, CC, functions as a core facility that supports basic, translational, and clinical research using PET. It is a vertically integrated facility, with resources to produce positron-emitting radionuclides, manufacture PET radiopharmaceuticals in a Read More...

November 2024 Newsletter

Web Page

CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New NIH Resource Resources Derive Greater Insights and Accelerate your Research Using Bioinformatic Tools! CREx is an NIH Read More...

December 2024 Newsletter

Web Page

CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New NIH Resource Resources Advance your research with the NIH Mouse Imaging Facility (MIF) The NIH Mouse Imaging Read More...

Newsletter Archive

Web Page

/*color variables main= #1E1E1E secondery= #333333 highlight= #073254 */ * { box-sizing: border-box; } body, html { font-family: "Open Sans", sans-serif; } .clearfix:before, .clearfix:after { content: " "; display: table; } .clearfix:after { clear: both; } h1, h2, h3, h4, h5, h6 { font-weight: 300; } body Read More...

Biopharmaceutical Development Program (BDP)
Frederick, MD

Collaborative

The Biopharmaceutical Development Program (BDP) provides resources for the development of investigational biological agents. The BDP supports feasibility through development and Phase I/II cGMP manufacturing plus regulatory documentation.The BDP was established in 1993. We Read More...

Microfluidic Diffusion Sizing (MDS) - Fluidity One-M

Web Page

Back Services: Biophysics Facility offers MDS as an open-access instrument. First-time users must complete a short training session before gaining access to the instrument reservation calendar. Training includes the KD determination of a standard molecular Read More...

BTEP Video Archive of Past Classes

Web Page

Bioinformatics

Listed below are the video recordings of past BTEP events (classes, seminars, workshops). Videos are hosted on various servers and may play slightly differently. Some videos may be downloaded for local viewing. Recorded Videos of Read More...

R Introductory Series: Filtering by row

Web Page

Bioinformatics

Now let's filter the rows based on a condition. Let's look at only the treated samples in scaled_counts using the function filter() . filter() requires the df as the first argument followed by Read More...

R Introductory Series: Introduction to R and RStudio

Web Page

Bioinformatics

Learning Objectives To understand: 1. the difference between R and RStudioIDE. 2. how to work within the RStudio environment including: creating an Rproject and Rscript navigating between directories using functions obtaining help how R can enhance data Read More...

Data Wrangling with R: Unite and separate

Web Page

Bioinformatics

There are two additional functions from Tidyr that are very useful for organizing data: unite() and separate() . These are used to split or combine columns. For example, you may have noticed that our feature column Read More...

Data Wrangling with R: Data

Web Page

Bioinformatics

Let's load in some data to work with. In this lesson, we will continue to use sample metadata, raw count data, and differential expression results from the airway RNA-Seq project. Load the data: #sample Read More...

Data Wrangling with R: Importing data

Web Page

Bioinformatics

For this lesson, we will use sample metadata and differential expression results from the airway RNA-Seq project. Let's begin by importing the data. #sample information smeta ## 1 GSM1275862 N61311 untrt untrt SRR10395… 126 SRX384345 SRS50… SAMN0242… ## 2 Read More...