NATIONAL CANCER INSTITUTE - CANCER.GOV

Search Results for: SWR Brca2 exon 27 del

Total Results Found: 108

NCI LASP Mouse Modeling & Cryopreservation (MMC)
Frederick, MD

Core Facility

Repositories

The Mouse Modeling Core assists NIH investigators by generating and preserving genetically-engineered mouse strains. Services include scientific consultation, gene-targeting in mouse embryonic stem cells, micro-injection of nucleic acids, proteins, or ES cells into mouse embryos, Read More...

Submitting R Scripts via command line

Web Page

Bioinformatics

07/27/2023 - Lesson 4 of  Toward Reproducibility with R on Biowulf will focus on using R from the command line and submitting R scripts using sbatch  on Biowulf. There will also be a brief discussion on paralellizing Read More...

Data Visualization with R: Question 2

Web Page

Bioinformatics

Explore the data. What is the structure of the data? Try str() . What are the column names? Try colnames() . How can you get help if you do not know how to use these functions? {{Sdet}} Read More...

NGS Visualization Tool

Web Page

Bioinformatics

09/27/2024 - This session describes the application of the web-based interactive OmicCircos in R Shiny to construct circular plots with desired biological features. Example data from human and mouse genomes will be used to demonstrate over Read More...

Crafting Your Generative AI Usage Strategy

Web Page

Bioinformatics

08/27/2024 - This 45-minute online Lunch and Learn training will help attendees develop their own customized strategy for responsibly incorporating generative artificial intelligence (AI) tools, such as ChatGPT, into their workflows.  By the end Read More...

AI to Accelerate Biomedical Research

Web Page

Bioinformatics

06/27/2024 -   Alternative Meeting Information:  Meeting number: 2310 497 7985 Password: mjPjjmi$473 Join by video system Dial  23104977985@cbiit.webex.com You can also dial 173.243.2.68 and enter your meeting number. Join by phone 1-650-479-3207  Call-in number (US/Canada) Read More...

NIH Library Workshop: Qiagen Ask Me Anything (AMA)

Web Page

Bioinformatics

06/27/2024 - In this  in-person  session, participants will have an opportunity to discuss their own research and use of Qiagen products with Qiagen scientists. Note on Technology Participants are expected to bring Read More...

An Introduction to DAVID for Functional Enrichment Analysis

Web Page

Bioinformatics

03/27/2024 - DAVID (the Database for Annotation, Visualization and Integrated Discovery) provides a comprehensive set of functional annotation tools for investigators to understand the biological meaning behind large lists of genes acquired from high-throughput assays such Read More...

Using Containers in Bioinformatics Analyses

Web Page

Bioinformatics

02/27/2024 - This session will cover what are containers, and why and how to use them in your Bioinformatics workflows. We will review best practices, basic commands, and useful resources. This session is geared towards beginners.& Read More...

Data Wrangling with R: Practice problems

Web Page

Bioinformatics

Which of the following will throw an error and why? 4 _ chr :1:2: unexpected input ## 1: 4_ ## ^ . 4 chr :1:3: unexpected symbol ## 1: .4chr ## ^ {{Edet}} Create the following objects; give each object an appropriate name (your best guess at what name to Read More...

Data Management and Sharing: Part 1

Web Page

Bioinformatics

07/27/2023 - This course provides detailed information on managing and sharing data from the first data planning stage, through the data life cycle, to data archiving, and finally to selecting an appropriate repository for data preservation. Read More...

Data Wrangling in R: Part 1

Web Page

Bioinformatics

02/27/2023 - Data Wrangling is another class in the NIH Library Introduction to R and RStudio Series. A basic understanding of using R and RStudio to manage data is expected. This one-hour class will introduce the Read More...

Data Management and Sharing: Part 2

Web Page

Bioinformatics

01/27/2023 - This course provides detailed information on managing and sharing data from the first data planning stage, through the data life cycle, to data archiving, and finally to selecting an appropriate repository for data preservation. Read More...

Statistical Adjustment for Multiplicity Virtual Workshop

Web Page

Bioinformatics

10/26/2022 - The Division of Cancer Prevention is hosting the  Statistical Adjustment for Multiplicity Virtual Workshop  from  October 26-27, 2022 . Workshop Goal The goal of this workshop is to bring together medical doctors, epidemiologists, and statisticians from Read More...

Data Management and Sharing: Part 1

Web Page

Bioinformatics

09/27/2022 - This course provides detailed information on managing and sharing data from the first data planning stage, through the data life cycle, to data archiving, and finally to selecting an appropriate repository for data preservation. Read More...

PATHWAY ANALYSIS

Web Page

Bioinformatics

09/27/2021 - The training will overview the current status of pathway tools, with focus on software available to NIH community.  It will discuss the biological interoperation of mutation and expression data in the context of pathways, Read More...

Cancer Moonshot Seminar Series

Web Page

Bioinformatics

05/27/2021 - Register here This seminar series showcases research from different Cancer Moonshot initiatives that support the 10 recommendations of the  Blue Ribbon Panel  report. These presentations will inform the community about the progress of Cancer Moonshot– Read More...

GENOME BROWSER

Web Page

Bioinformatics

04/27/2021 - Register Session Description This course walks through using and applying two popular, freely available genome browsers and how they can help bioinformatics analysis: the University of California Santa Cruz (UCSC) Genome Browser and the Read More...

Genomics Technology Laboratory

Web Page

The Genomics Laboratory (formerly Laboratory of Molecular Technology) is an integrated, high-throughput molecular biology laboratory focusing on the development of genetics and genomics technologies, together with associated laboratory automation systems, data analysis, and information management Read More...

CLIA Molecular Diagnostics Laboratory
Frederick, Maryland

Core Facility

CLIA-Certified Technologies Offered: Fragment Analysis for Micro-satellite Instability Detection, Pharmacoscan Array for Pharmacogenomics, Mutation Detection for PCR and Sanger Sequencing, DNA extraction from whole blood, saliva, FFPE tissues, buccal swabs, nails, hair, PBMCs, buffy coats, Read More...

CCR Genomics Technology Laboratory (GTL)
Frederick, MD

Core Facility

The Genomics Technology Laboratory is an integrated, high-throughput molecular biology laboratory focusing on the development of genetics and genomics technologies, data analysis, and information management tools, in support of CCR Investigators. The laboratory develops integrated Read More...

June 2024 Newsletter

Web Page

CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New CREx Program Manager The CREx Team is happy to announce Deepika Velampati as the new CREx Program Read More...

Data Management and Sharing, Part 2

Web Page

Bioinformatics

06/27/2025 - This one-hour and fifteen minute online training is part two of an introductory two-part series for those who want to learn about research data management and sharing, or for those who are interested in Read More...

Agentic AI in Cancer Research

Web Page

Bioinformatics

05/27/2025 - Agentic AI is a class of artificial intelligence that acts autonomously to make decisions and take actions to achieve specific goals. During this event, the participants will discuss the emerging role of AI agents Read More...

From Cell Atlases to Medicines with AI

Web Page

Bioinformatics

03/27/2025 - Please note: Registration is required to get the Meeting Link for this event. Please pre-register. Aviv Regev is head of Genentech Research and Early Development. Formerly, Regev was Chair of the Faculty and Core Read More...

Introduction to Cancer Cloud Resources

Web Page

Bioinformatics

03/27/2024 - This half-day, virtual workshop features representatives from NCI cancer data cloud resources, including the  NCI Cancer Research Data Commons  (CRDC),  Institute for Systems Biology Cancer Gateway in the Read More...

Data Wrangling with R: Reshape challenge

Web Page

Bioinformatics

Use pivot_longer to reshape countB. Your reshaped data should look the same as the data below. {{Sdet}} Solution } library ( tidyverse ) countB % rownames_to_column ( "Feature" ) countB_l ## 1 Tspan6 1 703 71 ## 2 Tspan6 2 567 970 ## 3 Tspan6 3 867 242 ## 4 TNMD 1 490 342 ## 5 TNMD 2 482 935 ## 6 Read More...

Data Wrangling with R: Lesson 2: Help Session

Web Page

Bioinformatics

This is our first coding help session. We have designed some practice problems to get you acquainted with using R before beginning to wrangle in our next lesson. Practice problems Which of the following will Read More...

Data Wrangling with R: Putting it all together

Web Page

Bioinformatics

Load in the comma separated file "./data/countB.csv" and save to an object named gcounts . {{Sdet}} Solution } gcounts `...1` colnames ( gcounts )[ 1 ] ## 1 Tspan6 703 567 867 71 970 242 ## 2 TNMD 490 482 18 342 935 469 ## 3 DPM1 921 797 622 661 8 500 ## 4 SCYL3 335 216 222 774 979 793 ## 5 FGR 574 574 515 584 941 344 ## 6 CFH 577 792 672 104 192 936 ## 7 FUCA2 798 766 995 27 756 546 ## 8 GCLC 822 874 923 705 667 522 ## 9 NFYA 622 793 918 868 334 64 {{Edet}} Plot the Read More...

An Introduction to Pathogen Data at NCBI

Web Page

Bioinformatics

07/27/2023 - For 35 years, NCBI has collected a vast amount of sequence information including from a diverse array of organisms, including viruses, bacteria and fungi. With all of the databases and tools available& Read More...

Introduction to Bioinformatics Summer Series: Lesson Topics

Web Page

Bioinformatics

Introduction to Bioinformatics Resources at NCI (06/13, Instructor Amy Stonelake, PhD (BTEP)) In this lesson, attendees will be introduced to the different bioinformatics resources available to them at NCI. This includes: Bioinformatics Training Classes and Events Read More...

Part 2: Overview of Study Design

Web Page

Bioinformatics

06/27/2023 - In partnership with the NIH Clinical Center's Biostatistics and Clinical Epidemiology Service (BCES), the NIH Library is offering classes geared to cover general concepts behind statistics and epidemiology. This four-part lecture series will Read More...

Data Visualization with R: Histogram

Web Page

Bioinformatics

Understanding data distribution can help us decide appropriate downstream steps in analysis such as which statistical test to use. A histogram is a good way to visualize distribution. It divides the data into bins or Read More...

Bioinformatics for Beginners: RNA-Seq Data Analysis

Web Page

Bioinformatics

09/27/2022 - Course Objectives: This 12-week long course is for scientists wanting to learn basic bioinformatics skills. Material will be taught at a beginner to intermediate level. There are no pre-requisites. Learners will: Learn Unix skills Read More...

Introduction to R and RStudio

Web Page

Bioinformatics

06/27/2022 - This is the first class in the NIH Library Introduction to R Series. This class provides a basic overview of the functionality of R programming language and RStudio. R is a programming language and Read More...

OVERVIEW OF COMMON STATISTICAL TESTS: PART 2

Web Page

Bioinformatics

01/27/2022 - In partnership with the NIH Clinical Center's Biostatistics and Clinical Epidemiology Service (BCES), the NIH Library is offering a class geared to cover the general concepts behind common statistical tests. This two-part lecture Read More...

Genomic Data Commons Single Cell RNA-Seq Support

Web Page

Bioinformatics

09/27/2021 - The NCI Genomic Data Commons’ (GDC) September webinar will introduce cancer researchers and bioinformaticians to the GDC's single-cell RNA-Seq (scRNA-Seq) data workflow. Single cell sequencing is a powerful platform for studying tumor heterogeneity Read More...

STATISTICS AND MACHINE LEARNING

Web Page

Bioinformatics

05/27/2021 - Register Now Faculty:   Shannon McWeeney, PhD – Oregon Health & Science University; NCI Cancer Moonshot DRSN Moderator:   Santosh Putta, PhD Target Audience This series will serve as an excellent resource for all stakeholders interested Read More...

Bulk RNA-Seq Analysis on NIDAP

Web Page

Bioinformatics

05/27/2021 - RNA sequencing (RNA-seq) is a widely used method in genomics, which enables the interrogation of whole cellular transcriptomes. The CCR Collaborative Bioinformatics Resource (CCBR) has implemented a RNA-seq workflow on the NIDAP collaboration platform, Read More...

NCI’s New Cancer Moonshot℠ Biobank Website

Web Page

Bioinformatics

01/27/2021 - Register now and join us via Webex. Speakers: Esmeralda Casas-Silva, Ph.D.; Veena Gopalakrishnan, Ph.D.; Helen Moore, Ph.D.; Claire Blaustein National Cancer Institute NCI's Cancer Moonshot℠ Biobank will engage diverse participants Read More...

Genome Data Commons RNA-Seq Data Processing

Web Page

Bioinformatics

07/27/2020 - The GDC RNA-Seq Analysis pipeline quantifies protein-coding gene expression. RNA-Seq data is aligned to the reference genome to detect splice junctions and then re-aligned to increase quality. Gene expression quantification and fusion detection are Read More...

ACD Spatial Genomics Seminar

Web Page

Bioinformatics

02/27/2020 - In this symposium, distinguished scientists will share recent successes in their research to visualize RNA targets at the single molecule level with single cell resolution and morphological context. Here are some of the exciting Read More...

July 2023 Newsletter

Web Page

CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Cores on CREx NIBIB BEPS Micro Analytical Immunochemistry Unit The Micro Analytical Immunochemistry Unit employs a variety Read More...

January 2022 Newsletter

Web Page

CREx News & Updates January 2022 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Site Spotlight NCI ANTIBODY CHARACTERIZATION LABORATORY (ACL) The ACL specializes in rigorously validating antibodies for signaling and Read More...

Technology Video Library

Web Page

The OSTR offers cutting-edge technology platforms to the CCR scientific community through centralized facilities. The videos accessed through this page are designed to introduce the various scientific methodologies OSTR makes available through the cores on Read More...

Class Documents

Web Page

Bioinformatics

Most BTEP courses include detailed course materials including lesson content, additional resources, and lesson associated data. These course materials are listed here so that learners can easily return to and review concepts taught in class Read More...

BTEP Video Archive of Past Classes

Web Page

Bioinformatics

Listed below are the video recordings of past BTEP events (classes, seminars, workshops). Videos are hosted on various servers and may play slightly differently. Some videos may be downloaded for local viewing. Recorded Videos of Read More...

Bioinformatics for Beginners 2022: What is the SRA?

Web Page

Bioinformatics

The SRA (Sequence Read Archive) at NCBI is a large, public database of DNA sequencing data. The repository holds "short reads" generated by high-throughput next-generation sequencing, usually less than 1,000 bp. We will download Read More...