Frederick, MD
Core Facility
The FNLCR Molecular Histopathology Laboratory (MHL) provides comprehensive veterinary pathology support for animal health monitoring, biomarker discovery and validation, drug development, genomics, and proteomics on a cost recovered basis. The MHL is organized into multiple Read More...
Frederick, MD
Core Facility
The Electron Microscopy Core (EMC), formerly known as Electron Microscopy Lab (EML), offers investigators access to unique expertise and EM technologies that allow CCR Investigators to explore new avenues of research in order to enhance Read More...
Bethesda, MD
Core Facility
The core provides access to several different state-of-the-art 3D microscopes as well as computers to visualize and process image data. The facility houses equipment for 2D or 3D imaging of fixed and living specimens. High Read More...
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Back Services: Biophysics Facility offers MDS as an open-access instrument. First-time users must complete a short training session before gaining access to the instrument reservation calendar. Training includes the KD determination of a standard molecular Read More...
Frederick, Maryland
Core Facility
CLIA-Certified Technologies Offered: Fragment Analysis for Micro-satellite Instability Detection, Pharmacoscan Array for Pharmacogenomics, Mutation Detection for PCR and Sanger Sequencing, DNA extraction from whole blood, saliva, FFPE tissues, buccal swabs, nails, hair, PBMCs, buffy coats, Read More...
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Back Services: Biophysics Facility offers MST as an open-access instrument. First-time users must complete a short training session before gaining access to the instrument reservation calendar. Training includes the KD determination of a Read More...
Rockville, MD
Trans NIH Facility
NISC’s role within NHGRI, and more broadly across NIH, aims to advance genome sequencing and its many applications, with a goal not simply to produce sequence data, but to produce the infrastructure required to Read More...
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Bioinformatics
SnapGene can read alignment files from Clustal, GDE, MSF, NEXUS, PHYLIP, PIR, Selex, Stockholm. In addition, SnapGene can read files from the following programs: ApE (.ape), CLC (.clc), Clone Manager, DNA Strider, DNADynamo (.cow), DNASIS (. Read More...
Web Page
Bioinformatics
The "parallel" tool executes commands in "parallel", one for each CPU core in your system. See Tool: Gnu Parallel - Parallelize Serial Command Line Programs Without Changing Them cat runids.txt | Read More...
Web Page
Bioinformatics
GNU parallel executes commands in "parallel", one for each CPU core on your system. It can serve as a nice replacement of the for loop . See Tool: Gnu Parallel - Parallelize Serial Command Read More...
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Bioinformatics
Now that we have accession numbers to work with, let's use parallel and fastq-dump to download the data. GNU parallel executes commands in "parallel", one for each CPU core on your system. Read More...
Web Page
Bioinformatics
Now that we have accession numbers to work with, let's use parallel and fastq-dump to download the data. GNU parallel is a shell tool for executing jobs in parallel using one or more computers. Read More...
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Bioinformatics
High resolution single cell profiling assays have provided an unprecedented view of many biological systems and processes, but the spatial context in which this biology is occurring is often crucial. Spatial profiling, including spatial transcriptomic Read More...
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Bioinformatics
Listed below are the video recordings of past BTEP events (classes, seminars, workshops). Videos are hosted on various servers and may play slightly differently. Some videos may be downloaded for local viewing. Recorded Videos of Read More...
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Bioinformatics
This page uses content directly from the Biostar Handbook by Istvan Albert. Review: * downloading data from SRA * decompressing tar files * e-utilities * fastq-dump Learn: * sra-stat * XML format * automating SRA downloads * working with comma-separated values (csv) format * Read More...
Web Page
Bioinformatics
Lesson 6: sra-tools, e-utilities, and parallel This page uses some content directly from the Biostar Handbook by Istvan Albert. Lesson 5 Review: The majority of computational tasks on Biowulf should be submitted as jobs: sbatch or swarm Read More...
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Bioinformatics
Lesson 6: Downloading data from the SRA For this lesson, you will need to login to the GOLD environment on DNAnexus. Lesson 5 Review: The majority of computational tasks on Biowulf should be submitted as jobs: sbatch Read More...