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The NIH Bioinformatics Training Calendar contains descriptions and links to bioinformatics training events and talks on related topics from all over the NIH campus, not just BTEP sponsored events.

The Single Cell Analysis Facility (SCAF) is a CCR facility dedicated to the application of single-cell technologies in cancer research. Based on the NIH Bethesda main campus, SCAF aims to provide the broadest range of Read More...

The CCR Single Cell Analysis Facility (SCAF): An Overview The Single Cell Analysis Facility (SCAF) is a CCR facility dedicated to the application of single-cell technologies in cancer research. Based on the NIH Bethesda main Read More...

04/03/2024 - The Single Cell Analysis Facility (SCAF) is a CCR facility dedicated to the application of single-cell technologies in cancer research. Based on the NIH Bethesda main campus, SCAF aims to provide the broadest range Read More...

08/22/2023 - In this session, we will discuss conceptual overview of a computing cluster, how to get access to the NCI cluster in Frederick (FRCE) and how to connect and run basic programs. We will also Read More...

08/15/2023 - This talk will cover what to do when you first start looking at a new dataset. We will also discuss how to efficiently orient the data to avoid pitfalls and maximize knowledge gain in Read More...

To connect to Biowulf, you must be on the NIH network, either on campus or via VPN. We will then connect using an ssh protocol. Open your terminal if on a mac or the command Read More...

06/22/2023 - The Bhattacharya Lab at the UCSF Parnassus Campus is focused on the functional role of monocyte-derived macrophages in the onset and persistence of fibrosis in the lung. We are addressing the following major questions, Read More...

04/13/2023 - The NICHD DIR Tenure-Track Investigator Virtual Symposia Series provides tenure-track investigators within NICHD the opportunity to organize a virtual mini-symposium to showcase their area of science to the NICHD DIR and larger NIH intramural Read More...

09/12/2022 - We welcome members of the NIH to join us for a seminar event, covering multiplexed, direct digital gene expression profiling applications utilizing NanoString nCounter expression profiling technology as well as spatial biology discoveries generated Read More...

06/05/2019 - You do not need to currently have an account on Biowulf to attend this class. Computers are provided in the classroom, you may also bring your own laptop. If you bring your own laptop, Read More...

06/20/2013 - This is repeat of the lecture given June 11th on the Bethesda Campus. Common sample prep and library preparation pitfalls Understand what determines the quality of your NGS data Current publishing and data reporting Read More...

Biowulf is the National Institutes of Health's (NIH) high-performance computing (HPC) cluster. This massive Linux system boasts over 90,000 processors, allowing it to tackle enormous computational tasks by dividing jobs and running them simultaneously across Read More...

Biowulf is the National Institutes of Health's (NIH) high-performance computing (HPC) cluster. This massive Linux system boasts over 90,000 processors, allowing it to tackle enormous computational tasks by dividing jobs and running them simultaneously across Read More...

To get started, open the Command Prompt (Windows) or the Terminal (Mac) and connect to Biowulf. Remember you need to be connected to the NIH network either by being on campus or through VPN. Recall Read More...

To get started, open the Command Prompt (Windows) or the Terminal (Mac) and connect to Biowulf. Remember you need to be connected to the NIH network either by being on campus or through VPN. Recall Read More...

Sign onto Biowulf using the assigned student account. Remember, Windows users will need to open the Command Prompt and Mac users will need to open the Terminal. Also remember to connect to the NIH network Read More...

Sign onto Biowulf using the assigned student account. Remember, Windows users will need to open the Command Prompt and Mac users will need to open the Terminal. Also remember to connect to the NIH network Read More...

To get started, open the Command Prompt (Windows) or the Terminal (Mac) and connect to Biowulf. Remember you need to be connected to the NIH network either by being on campus or through VPN. Recall Read More...

To get started, open the Command Prompt (Windows) or the Terminal (Mac) and connect to Biowulf. Remember you need to be connected to the NIH network either by being on campus or through VPN. Recall Read More...

To get started, open the Command Prompt (Windows) or the Terminal (Mac) and connect to Biowulf. Remember you need to be connected to the NIH network either by being on campus or through VPN. Recall Read More...

After this lesson, participants will Know how to download data from the web Work with tape archives (tar files) Be able to create text files and tabular data Be able to view and page through Read More...

Name the softwares for Windows and Macs are used to connect to Biowulf. {{Sdet}}{{Ssum}}Solution{{Esum}} Windows users will use the Command Prompt Mac users will use the Terminal {{Edet}} True or False: Connection Read More...

Name the softwares for Windows and Macs are used to connect to Biowulf. {{Sdet}}{{Ssum}}Solution{{Esum}} Windows users will use the Command Prompt Mac users will use the Terminal {{Edet}} True or False: Connection Read More...

Sign onto Biowulf using the assigned student account. Remember, Windows users will need to open the Command Prompt and Mac users will need to open the Terminal. Also remember to connect to the NIH network Read More...

Sign onto Biowulf using the assigned student account. Remember, Windows users will need to open the Command Prompt and Mac users will need to open the Terminal. Also remember to connect to the NIH network Read More...

Register now for an upcoming seminar on January 22, 2025 , “Revealing Tumor-Promoting Signals in Breast Cancer Subtypes: A NIDAP Analysis of Single-Cell Data” . This one-hour talk will feature guest speaker and NIDAP developer, Josh Meyer, who will Read More...

11/12/2024 - Join us at the upcoming hybrid NIH BRAIN NeuroAI Workshop on November 12 and 13, with virtual access to in-person panels and discussions at the NIH Campus in Bethesda, MD. Artificial intelligence (AI) is reshaping technology Read More...

02/21/2024 - Dear colleagues, The Bioinformatics and Computational Biosciences Branch (BCBB) at NIAID invites you to join us for in-person hands-on workshops that will explore biovisualization techniques. Developers of UCSF ChimeraX and Cytoscape will be on Read More...

Love Data Week 2024 is quickly approaching! What is Love Data Week?  Love Data Week is an international week of celebrating all things data related, with an emphasis on data management, sharing, and security. Read More...

12/08/2023 - This presentation will discuss strategies and policies for effective sharing and reuse of large multidimensional datasets. Dr. Espinosa will discuss his experiences as a data generator, data analyst, collaborator, teacher, and mentor through the Read More...

09/06/2023 - With the advancements in single cell and spatial profiling technologies and methods, some of us thought it would be helpful to re-establish a community of end users on campus. We invite those that are Read More...

NIDAP , the  N IH  I ntegrated  D ata  A nalysis  P latform, is an innovative, cloud-based, and collaborative data aggregation and analysis platform. The platform Read More...

You must be on VPN (Virtual Private Network) or the NIH campus internet to access Biowulf. Request VPN at NCI . If you have a Biowulf account but have not used it in 60 days, please send Read More...

Access the NIH network; this will require you to VPN if off campus. Connect to Biowulf ssh user_name@biowulf.nih.gov where user_name is your NIH username. Use sinteractive to work on an Read More...

Logging into Biowulf You must be on VPN (Virtual Private Network) or the NIH campus internet to access Biowulf. Request VPN at NCI . If you have a Biowulf account but have not used it in 60 Read More...

You will need: active, unlocked Biowulf account (hpc.nih.gov) active Globus account for transferring files OR set up a file transfer program ( Filezilla ) for Mac or WinSCP for Windows PC. program to establish a Read More...

Biostars on Biowulf To complement this course, there is a module available on Biowulf with installed programs associated with the Biostar Handbook. During class, we will work on the command line on the GOLD system Read More...

01/24/2023 - Welcome to BTEP’s Introduction to Unix on Biowulf course series. We will meet on Tuesdays and Thursdays from 1 pm to 2 pm (starting January 24, 2023) to learn how to work in the Unix command line Read More...

10/04/2022 - Speaker: Steven D Cappell NIH Stadtman Investigator Center for Cancer Research – National Cancer Institute – Bethesda MD My laboratory is integrating quantitative image analysis with genetic, biochemical, and systems biology approaches to understand how cells Read More...

09/21/2022 - Join University of Colorado’s Dr. Arjun Krishnan as he discusses how machine learning and natural language processing can contribute to making public -omics data more accessible. Dr. Krishnan will also present the recent Read More...

03/05/2021 - Overview: The Human Cell Atlas (HCA) is an ambitious global initiative that aims to create a comprehensive reference map of all human cells—the fundamental units of life—as a basis for both understanding Read More...

02/09/2021 - Sarah Teichmann Head of the Cellular Genetics Programme - Wellcome Sanger Institute - Cambridge UK Lab homepage: https://www.sanger.ac.uk/group/teichmann-group/ Venue: zoom conference https://nih.zoomgov.com/j/1619988709?pwd=dEIwM0 Read More...

04/09/2019 - DNAnexus provides a secure cloud based platform for the analysis, storage and sharing of many different types of genomic data. CCR has recently established a Pilot program to enable CCR researchers to use this Read More...

06/26/2018 - DNAnexus provides a secure cloud based platform for the analysis, storage and sharing of many different types of genomic data. A point-and-click web environment provides ready access to powerful tools for the analysis, integration Read More...

Sign onto Biowulf using the assigned student account. Remember, Windows users will need to open the Command Prompt and Mac users will need to open the Terminal. Also remember to connect to the NIH network Read More...

Sign onto Biowulf using the assigned student account. Remember, Windows users will need to open the Command Prompt and Mac users will need to open the Terminal. Also remember to connect to the NIH network Read More...

There are a number of core facilities available to NCI researchers. See more information from the Office of Science and Technology Resources. We most commonly see data from the following cores: CCR Sequencing Facility (CCR-SF) Read More...

To sign onto Biowulf, the users must be connected to the NIH network either by being on campus or through the VPN. Windows 10 or above users will need to open the Command Prompt (type cmd Read More...

To sign onto Biowulf, the users must be connected to the NIH network either by being on campus or through the VPN. Windows 10 or above users will need to open the Command Prompt (type cmd Read More...

NIH Bioinformatics Calendar, sponsored by the NCI CCR Bioinformatics Training and Education Program (BTEP), contains information on all bioinformatics (and some data science) trainings/ presentations/ classes offered on the NIH campus. BTEP Distinguished Speakers Seminar Read More...

Remember that if you are not on campus, then you need to connect to the NIH network through VPN. Regardless whether you are using the Windows Command Prompt or Mac Terminal, the construct for ssh Read More...

Remember that if you are not on campus, then you need to connect to the NIH network through VPN. Regardless whether you are using the Windows Command Prompt or Mac Terminal, the construct for ssh Read More...

Many established and emerging technologies are available to CCR scientists.  This technology-rich environment makes the CCR a unique place to conduct scientific research.  Through the OSTR, the CCR continues to find Read More...

Home Biophysics Core Technologies Biophysics Core Services The Biophysics Core The Biophysics Core Facility (BCF) was established in 2008 in the NHLBI as an advanced service laboratory providing expertise, training, consultations, and instrument access for intramural Read More...

The rapid advancement of single-cell technology has provided new powerful tools to answer many biological questions, such as identifying new or rare cell populations and characterizing the complexities of tumor heterogeneity. Realizing the great potential Read More...

The Biomedical Engineering and Physical Science (BEPS) shared resource supports NIH’s intramural basic and clinical scientists on applications of engineering, physics, imaging, measurement, and analysis. BEPS is centrally located on the main NIH campus Read More...

The CCR Genomics Core is located in Building 41 on the NIH Bethesda campus. The primary goal of the Core is to provide investigators from CCR/NCI and other NIH Institutes access to genomic technologies and Read More...

The facilities at AIM are available for use by the entire NIH intramural research community. While we welcome users with any size imaging project, AIM specializes in large, yearlong (or longer), collaborative research efforts with Read More...

[tabby title="Home"] About NICE-NIH Intramural CryoEM Consortium  NIH Intramural CryoEM Consortium (NICE) serves intramural investigators in all NIH IC’s. NICE provides access to state-of-the-art Titan Krios cryo-electron microscopes for atomic-resolution structure determination of Read More...

How to download data from the Sequence Read Archive (NCBI/SRA) to your account on NIH HPC Biowulf You will need: active, unlocked Biowulf account (hpc.nih.gov) active Globus account for transferring files OR Read More...

Lesson 2: Getting Started with R on Biowulf Learning objectives Understand how R can be deployed on Biowulf Understand how to access and use R modules Learn to create a custom R library on Biowulf Deploying Read More...

Learning Objectives Understand the components of an HPC system. How does this compare to your local desktop? Learn about Biowulf, the NIH HPC cluster. Learn about the command line interface and resources for learning. What Read More...

03/20/2017 - BTEP Workshop on RNA-Seq Data Analysis (2-day) This 2-day workshop, which includes both lecture and hands-on components, will cover the fundamentals of and best practices for RNA-Seq Data Analysis. Learn everything from experimental design Read More...

01/07/2016 - REGISTRATION IS FULL FOR THIS WORKSHOP (25 ATTENDEES; 6 WAITLIST) The Cancer Genome Atlas (TCGA) is a large-scale study that has cataloged genomic data accumulated for many different types of cancers, and includes mutations, copy number Read More...