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Search Results for: degree of aggregation

Total Results Found: 62

Introduction to R: Part 1 – Data Wrangling

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Bioinformatics

08/30/2024 - This course is designed to provide participants with an introduction to R programming, specifically focusing on data wrangling techniques. Throughout the course, participants will gain a comprehensive understanding of how to effectively use RStudio, Read More...

The CCBR Single-cell RNA-seq Workflow on NIDAP

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Bioinformatics

05/29/2024 - This talk will cover a scRNA-seq workflow available to NCI researchers on NIDAP. NIDAP, the NIH Integrated Data Analysis Platform, is a cloud-based and collaborative data aggregation and analysis platform that hosts user-friendly bioinformatics Read More...

Illumina seminar: DNA Methylation NGS and Microarrays

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Bioinformatics

06/29/2022 - The CCR Genomics, Sequencing and Single Cell Analysis Core Facilities are pleased to host a virtual technology seminar with Illumina. Presentation overview : For decades cancer methylation studies have provided insights into tumorigenic pathways and Read More...

BTEP Coding Club: What is NIDAP?

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Bioinformatics

NIDAP is the NIH Integrated Data Analysis Platform (NIDAP). NIDAP is an innovative, cloud-based, collaborative data aggregation and analysis platform that hosts user-friendly bioinformatics workflows and component analysis and visualization tools developed by the NCI Read More...

Capabilities of the NIDAP platform for Transcriptomic Analysis

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Bioinformatics

12/14/2023 - NIDAP , the NIH Integrated Data Analysis Platform, is a cloud-based, collaborative data aggregation and analysis platform that hosts user-friendly bioinformatics workflows and other component analysis and visualization tools. The NCI CCR Collaborative Bioinformatics Resource ( Read More...

Overview of large-scale image analysis in HALO via NIDAP

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Bioinformatics

11/16/2021 - The NCI HALO cloud deployment provides NCI researchers with powerful image management and analysis tools for digital pathology and numerous other 2D imaging applications. Key capabilities include expert user assessment, image archiving, and advanced Read More...

Identifying Drug Sensitivity Subnetworks with NETPHIX

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Bioinformatics

01/04/2021 - Abstract: Phenotypic heterogeneity in cancer is often caused by different patterns of genetic alterations. Understanding such phenotype-genotype relationships is fundamental for the advance of personalized medicine. In this talk, I will present a computational Read More...

Bioinformatics Resources for CCR Scientists: Description

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Bioinformatics

NIDAP (NIH Integrated Data Analysis Platform) is an innovative, cloud-based, collaborative data aggregation and analysis platform that hosts user-friendly bioinformatics workflows and component analysis and visualization tools developed by the NCI developer community based on Read More...

Center for Structural Biology: Biophysics Resource
Frederick, MD

Core Facility

The Biophysics Resource (BR) was established in January 2001. Our mission is to provide CCR investigators with access to both the latest instrumentation and expertise in characterizing the biophysical aspects of systems under structural investigation. The Read More...

Bioinformatics Resources

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Discover expert help with analysis, processing applications, and licensed software packages.

Biophysics Core Technologies

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Home About the Biophysics Core Biophysics Core Services [tabby title="Instrumentation"] NHLBI Biophysics Core The Biophysics Core Facility: Overview Core Facilities provide scientific resources, cutting-edge technologies and novel approaches to support DIR scientists. Availability of Read More...

Multi-Omics Applications in Human Liver Cancer

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Bioinformatics

06/05/2020 - Dr. Anuradha Budhu began her scientific career as a student researcher in the Undergraduate Biology Research Program (UBRP) at the University of Arizona, studying gene expression patterns in the larval brain of Drosophila Melanogaster. Read More...

BTEP Coding Club: Steps in a GSEA Analysis

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Bioinformatics

1) Create a ranked list of genes. More on ranking metrics below. 2) Select gene sets to test. There are many available databases with pre-defined gene sets. You should choose gene sets relevant to your experimental conditions / Read More...

BTEP Coding Club: Method outputs

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Bioinformatics

Enrichment Score and normalized enrichment score. Enrichment Score - represents the degree to which a set is over-represented at the top or bottom of the ranked list. normalized enrichment score (NES) - allows comparability across Read More...

Multi-Angle Light Scattering (MALS)

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Back Services: We offer a limited sample processing service using standard SEC-MALS and FFF protocols.  This service is intended for the occasional users of this system.  Researchers who expect to use this instrument Read More...

All Scientific Resources

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Cores & Facilities From centralized laboratories to collaborative resources and technologies available to CCR Investigators. NCI Cores Centralized laboratories providing broad access to cutting-edge technologies and specialized expertise. Browse NCI Cores Collaborative Resources are technologies and Read More...

CCR Collaborative Bioinformatics Resource (CCBR)
Bethesda, MD

Collaborative

The CCR Collaborative Bioinformatics Resource (CCBR) is a centrally funded resource group which provides a mechanism for CCR researchers to obtain many different types of bioinformatics assistance to further their research goals. The group has Read More...

NCI SAXS Facility
Frederick, MD

Collaborative

In order to meet increasing demands from both NIH intramural and extramural communities for access to a small angle X-ray scattering (SAXS) resource, the Center for Cancer Research (CCR) under the leadership of Drs. Jeffrey Read More...

Chemistry and Synthesis Center
Rockville, MD

Trans NIH Facility

The Chemistry and Synthesis Center (CSC) of the National Heart, Lung, and Blood Institute (NHLBI) provides IRP scientists with targeted imaging probes and chemical tools that help accelerate cell-based assays, in vivo imaging studies, and Read More...

Bioinformatics for Beginners 2022: B4b 2022 rnaseq jw

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Bioinformatics

This page uses content directly from the Biostar Handbook by Istvan Albert. Obtain RNA-seq test data. The test data consists of two commercially available RNA samples: Universal Human Reference (UHR) and Human Brain Reference (HBR) . Read More...

BTEP Coding Club: Results

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Bioinformatics

The resulting object eh is a gseaResult object. This object contains the results (eh@result) and other information that went into the analysis, for example, @organism type, @setType, the @geneSets used, the genes in our @ Read More...