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Search Results for: Focused Ion beam

Total Results Found: 118

Total Results Found: 118

CCR Volume Electron Microscopy Core(CVEMC)
Frederick, MD

Collaborative

CCR VOLUME Electron Microscopy Core (CVEMC),  formerly known as volume Electron Microscopy (vEM), aims to develop new techniques in volume electron microscopy (vEM) and, in collaboration with CCR Investigators, apply these techniques to research cell Read More...

Genetics, Genomics, and Epigenetics

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NanoString Technology The nCounter® Analysis System is an automated, multi-application, digital detection and counting system which directly profiles up to 800 molecules simultaneously from a single sample using a novel barcoding technology. Profile hundreds of mRNAs, Read More...

July 2023 Newsletter

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CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Cores on CREx NIBIB BEPS Micro Analytical Immunochemistry Unit The Micro Analytical Immunochemistry Unit employs a variety Read More...

NCI SAXS Facility
Frederick, MD

Collaborative

In order to meet increasing demands from both NIH intramural and extramural communities for access to a small angle X-ray scattering (SAXS) resource, the Center for Cancer Research (CCR) under the leadership of Drs. Jeffrey Read More...

Technology Video Library

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The OSTR offers cutting-edge technology platforms to the CCR scientific community through centralized facilities. The videos accessed through this page are designed to introduce the various scientific methodologies OSTR makes available through the cores on Read More...

STEP Requests

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The Staff Scientists/Clinicians (SSSC) Technical Enrichment Program (STEP) was established to provide SSSC’s an opportunity to compete for funding to gain comprehensive training in state-of-the-art techniques available through CCR Cores and Facilities. The Read More...

Frederick Sequencing and Genomic Core (FSGC)
Frederick , MD

Core Facility

The Frederick Sequencing and Genomics Core (FSGC) was established through the integration and consolidation of the former Sequencing Facility (SF) and the Genomics Technology Laboratory (GTL). The new FSGC eliminates redundancy and provides cutting edge Read More...

NCI LASP Gnotobiotics Facility (GF)
Frederick, MD

Core Facility

The Laboratory Animal Sciences Program (LASP) of the Frederick National Laboratory operates a Gnotobiotics Facility (GF) to support research focused on the role of microbiota in cancer inflammation, pathogenesis, and treatment response. The GF can Read More...

NCATS Functional Genomics Laboratory
Rockville, MD

Trans NIH Facility

The Functional Genomics Laboratory (formerly, the RNAi Screening Facility) of the National Center for Advancing Translational Sciences (NCATS) assist investigators with all stages of project planning and execution, beginning with assay development through genome-wide siRNA Read More...

Bio-Layer Interferometry (BLI) - Octet RED96

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Back Services: Biophysics Facility offers Octet as an open-access instrument.  First-time users must complete a short training session before gaining access to the instrument reservation calendar.  Training includes a full analysis of a Read More...

Antibody​​ Engineering Program

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The Antibody Engineering Program (AEP) is part of the Center for Cancer Research (CCR) at the National Cancer Institute (NCI). The program focuses on generating therapeutic antibodies by phage display technology, including human antibodies and Read More...

CCR Protein and Metabolite Characterization Core (PMCC)
Frederick, MD

Core Facility

Protein and Metabolite Characterization Core (PMCC), formerly known as the Protein Characterization Lab (PCL),  offers various technologies to CCR investigators to characterize proteins and metabolites. The core develops and applies state-of-the-art analytical technologies, primarily mass Read More...

Python Course in-person Help 2

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Bioinformatics

05/30/2025 - Thi in-per on e ion will help participant get tarted with Python programming on Biowulf. Participant will learn to connect to Biowulf' HPC OnDemand and tart a Jupyter Lab e ion. Jupyter Lab i Read More...

Python Course in-person Help 1

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Bioinformatics

05/28/2025 - Thi in-per on e ion will help participant get tarted with Python programming on Biowulf. Participant will learn to connect to Biowulf' HPC OnDemand and tart a Jupyter Lab e ion. Jupyter Lab i Read More...

Gene Set Enrichment Analysis with R

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Bioinformatics

06/18/2025 - Gene et enrichment analy i (G EA) i a popular tool for evaluating functional enrichment, e pecially following differential expre ion analy i . Thi e ion of the BTEP Coding Club will how attendee Read More...

Biowulf Virtual Walk-in Consults

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Bioinformatics

06/11/2025 - All Biowulf u er , and all tho e intere ted in u ing the y tem , are invited to call in to our Virtual Walk-in Con ult to di cu problem and concern , from Read More...

Python Course in-person Help 3

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Bioinformatics

06/04/2025 - Thi e ion will help participant of BTEP' Python introduction cour e with que tion related to cla .

Reproducible R with Git

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Bioinformatics

05/21/2025 - The programming language R i ideal for biomedical re earcher a it ha package that facilitate Next Generation equencing (NG ) data analy i . For example, bulk RNA equencing differential expre ion analy i can Read More...

Research

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CRTP

No summary available.

Top 20 Ways to Optimize Your SAS Code

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Bioinformatics

07/23/2025 - Thi one-hour training, provided by a pre enter from A , will demon trate tip and trick to make your A code run more efficiently. There are at lea t ix way to do mo Read More...

Generative AI, it's all about Embeddings

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Bioinformatics

07/09/2025 - From image analy i to federated learning and multimodal modeling, generative AI can be u ed to tudy ob ervational ucce ion acro cale and data type . At DCEG' Data cience and Engineering Re Read More...

Visualization Tools for Genomic Data

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Bioinformatics

07/01/2025 - Learn how to vi ualize equencing and analy i re ult effectively. Thi e ion de cribe the application of the web-ba ed interactive OmicCirco in R hiny to con truct circular plot with Read More...

Equivalency testing in R

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Bioinformatics

06/10/2025 - The tati ti c for Lun c h Training erie invite you to our June e ion: “Equivalen c y te ting in R”, pre ented by Dun c an Donohue, PhD. Thi talk Read More...

FAIR and AI-Ready Data Sharing

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Bioinformatics

05/29/2025 - Thi e ion i geared toward re earcher wanting to under tand and implement the kill and competencie needed to make biomedical and behavioral re earch data FAIR and AI-ready, including: FAIR principle and Read More...

Data Wrangling with R: Lesson 4

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Bioinformatics

Lesson 4 focused on data visualization with ggplot2. A summary RNA-Seq file ( RNASeq_totalcounts_vs_totaltrans.xlsx ) was used for this lesson as well as the file countB.csv . Both files are also available in Lesson3_ Read More...

Microbiome Analysis with QIIME2: References

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Bioinformatics

This course series primarily used information from QIIME2.org and the QIIME2 forum . Specifically, this course series focused on data and code from the QIIME2 Cancer Microbiome Intervention Tutorial . Special thanks goes to the QIIME 2 Read More...

AI Update: What's New in Artificial Intelligence?

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Bioinformatics

07/02/2025 - Thi 45-minute online training provide a high-level overview of recent development in artificial intelligence (AI). Each e ion highlight emerging trend , tool , and u e ca e in the evolving AI land cape, with Read More...

Pathway Analysis

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Bioinformatics

06/24/2025 - Tran late gene li t into biological in ight u ing pathway enrichment tool . Thi training will provide an overview the current tatu of pathway tool , with focu on oftware available to NIH community.  Read More...

Next Generation Precision Oncology - It's High Time

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Bioinformatics

04/23/2025 - Dr. Ruppin's research is focused on multi-disciplinary, algorithmic, computationally driven analysis of large-scale biomedical omics and clinical data, with an emphasis on AI and machine / deep learning approaches. Overall, it centers on three Read More...

Data Wrangling with R: Get the data

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Bioinformatics

Get the data Lesson 1 No data available. Lesson 2 No data available. Lesson 3 Lesson 3 covered data import and reshaping. Data unavailable through base R or other R packages, can be downloaded here . The survey / species data Read More...

Past Seminars

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Confocal

2024 Date: Tuesday, October 15, 2024 Time and Location: 11 am EST, ZOOM (INVITATION BY LMIG LIST SERVER) Speaker: Dr. Diego Presman (U Buenos Aires) Title: “Insights on Glucocorticoid Receptor Activity Through Live Cell Imaging” Summary: Eucaryotic transcription factors ( Read More...

Biowulf Virtual Walk-in Consult

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Bioinformatics

01/14/2026 - Please email staff@hpc.nih.gov for the meeting link. All Biowulf users and all those interested in using the systems are invited to call in to our Virtual Walk-in Consult to discuss problems Read More...

Virtual Walk-In Consult for Biowulf Users

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Bioinformatics

12/10/2025 - All Biowulf users, and all those interested in using the systems, are invited to call in to our Virtual Walk-in Consult to discuss problems and concerns, from scripting problems to node allocation, to strategies Read More...

Biowulf Virtual Walk-in Consults

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Bioinformatics

07/16/2025 - All Biowulf users, and all those interested in using the systems, are invited to call in to our Virtual Walk-in Consult to discuss problems and concerns, from scripting problems to node allocation, to strategies Read More...

NIH Artificial Intelligence Symposium

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Bioinformatics

05/16/2025 - This one-day in-person NIH AI Symposium will bring together researchers from a broad range of disciplines to share their AI-related research, with the goal of disseminating the newest AI research, providing an opportunity to Read More...

NCI Cancer Research Data Commons (CRDC) Symposium

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Bioinformatics

10/16/2024 - The CRDC will celebrate its 10th anniversary with this one-and-a-half-day event highlighting its accomplishments and looking ahead to exciting initiatives. We are planning many informative sessions and report-outs on new work, including our AI Read More...

Zoom-In Consult for Biowulf Users

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Bioinformatics

03/13/2024 - For inquires send email to staff@hpc.nih.gov Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited to stop by Read More...

Defining the Need for Open Data Metrics

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Bioinformatics

03/06/2024 - Please join us on Wednesday, March 6 when Daniella Lowenberg from the University of California, California Digital Library will present “Defining the Need for Open Data Metrics.”   Widespread adoption Read More...

Zoom-In Consult for Biowulf Users

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Bioinformatics

02/14/2024 - For inquires send email to staff@hpc.nih.gov Meeting ID: 160 198 9146 Passcode: 083637 Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited Read More...

Zoom-In Consult for Biowulf Users

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Bioinformatics

01/17/2024 - For inquires send email to staff@hpc.nih.gov Meeting ID: 160 335 9291 Passcode: 640160 Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited Read More...

Single Cell and Spatial Genomics Users Group

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Bioinformatics

01/10/2024 - Our series of talks continues next month with two 20-minute presentations focused on single cell genomics studies in the model organism zebrafish.  There will be light refreshments and we encourage attendees to Read More...

Zoom-In Consult for Biowulf Users

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Bioinformatics

12/13/2023 - For inquires send email to staff@hpc.nih.gov Meeting ID: 161 385 0213 Passcode: 179891 Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited Read More...

Zoom-In Consult for Biowulf Users

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Bioinformatics

11/15/2023 - For inquires send email to staff@hpc.nih.gov Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited to stop by Read More...

Zoom-In Consult for Biowulf Users

Web Page

Bioinformatics

08/16/2023 - For inquires send email to staff@hpc.nih.gov Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited to stop by Read More...

Zoom-In Consult for Biowulf Users

Web Page

Bioinformatics

07/12/2023 - For inquires send email to staff@hpc.nih.gov Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited to stop by Read More...

R or Python: Which should I learn?

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Bioinformatics

A common question posed to the Bioinformatics Training and Education Program (BTEP) is “How can I learn R and Python to analyze my data?”. First, it’s important to state that learning any programming language Read More...

Zoom-In Consult for Biowulf Users

Web Page

Bioinformatics

06/14/2023 - For inquires send email to staff@hpc.nih.gov Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited to stop by Read More...

Protein design, deep learning

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Bioinformatics

12/14/2022 - David Baker is the director of the Institute for Protein Design, a Howard Hughes Medical Institute Investigator, the Henrietta and Aubrey Davis Endowed Professor in Biochemistry, and an adjunct professor of genome sciences, bioengineering, Read More...

NIH HPC monthly Zoom-In Consults

Web Page

Bioinformatics

09/14/2022 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

Next Generation Transcriptomics-based Precision Oncology

Web Page

Bioinformatics

06/29/2022 - During this webinar, Computational Biologist Dr. Eytan Ruppin will present on “SELECT,” a computational approach that aims to identify clinically relevant synthetic lethal interactions, thereby harnessing them to predict patient response to cancer therapy Read More...

Data Wrangling with R

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Bioinformatics

06/07/2022 - Welcome to the Data Wrangling with R course series ! The purpose of this course is to introduce you to essential R packages and functions that will make your life easier when it comes time Read More...

Class Documents

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Bioinformatics

Most BTEP courses include detailed course materials including lesson content, additional resources, and lesson associated data. These course materials are listed here so that learners can easily return to and review concepts taught in class Read More...

Contacts

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Bioinformatics

General questions or comments about the BTEP program or classes should be addressed to: NCIBTEP@nih.gov Amy Stonelake, Ph.D . BTEP Program Manager and Bioinformatics Analyst amy.stonelake@nih.gov I am an experienced Read More...

Learning R with BTEP

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Bioinformatics

R is both a computational language and open-source environment for statistical computing and graphics. While R programming was ranked 20 th in popularity when compared with other programming languages in December 2023, it remains a favorite among Read More...

Microbiome Analysis with QIIME2: References

Web Page

Bioinformatics

References This course series primarily used information from QIIME2.org and the QIIME2 forum . Specifically, this course series focused on data and code from the QIIME2 Cancer Microbiome Intervention Tutorial . Special thanks goes to the Read More...