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Bioinformatics
10/03/2013 - Due to the recent Government Furlough this talk had been POSTPONED and wil be rescheduled at a later date. This 2-day course, which includes both lecture and hands - on components, will teach the Read More...
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Bioinformatics
08/28/2019 - Please bring your computer with Partek Genomics Suite to this hands-on workshop. You'll need to submit a request through “NCI at Your Service” to obtain the access to this software. Partek will demonstrate Read More...
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Bioinformatics
09/22/2015 - Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Open Source Tools. As we walk though hands-on analysis of a cancer dataset, you will learn the principles of experimental design, Read More...
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Bioinformatics
09/29/2014 - PLEASE NOTE: This 2 day workshop is a BYOC ( Bring your own LapTop Computer ) class. In order to provide more flexibility with room scheduling we are experimenting with a new format that involves students brining Read More...
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Bioinformatics
10/02/2012 - Microarray Technology and Preprocessing Quality Control Normalization Using MAS5 and RMA Filtering Batch Effect Correction Basic Statistical Tests for Differentially Expressed Genes T-test ANOVA SAM Calculating False Discovery Rate Principal Components Analysis and Clustering Read More...
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Bioinformatics
05/19/2020 - The class will start with an overview of Partek Genomics Suite with Pathway and followed with the hands-on training on Illumina 450K Methylation array data. The workflow can also be used on HumanMethylation27 (27K) Read More...
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Bioinformatics
06/15/2020 - Participants will learn about data loading, quality control, statistical analysis as well as biological contextualization of miRNA microarray data.
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Bioinformatics
02/19/2013 - Ingenuity Pathways Analysis (IPA) is software that helps researchers model, analyze, and understand the complex biological and chemical systems at the core of life science research. This training session will cover: Large Scale (gene Read More...
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Bioinformatics
Qlucore Omics Explorer (Qlucore) is a graphical user interface (GUI) based package used to generate visualizations, elucidate biological function, and classify samples as well as cells for omics data. {{Sdet}}{{Ssum}}Listing of Analysis Functions{{ Read More...
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Bioinformatics
04/03/2025 - DAVID (the Database for Annotation, Visualization and Integrated Discovery) provides a comprehensive set of functional annotation tools for investigators to understand the biological meaning behind large lists of genes acquired from high-throughput assays such Read More...
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Bioinformatics
06/16/2022 - For the Advanced Training, topics covered depend upon survey results: find key hubs using over-connectivity analysis; using Microarray repository for gene comparisons against public data; building networks with MetaCore; constructing your own pathway maps; Read More...
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Bioinformatics
10/19/2021 - For the Advanced Training, topics covered depend upon survey results: find key hubs using over-connectivity analysis; using Microarray repository for gene comparisons against public data; building networks with MetaCore; constructing your own pathway maps; Read More...
Bethesda, MD
Repositories
Trans NIH Facility
The CHTN is a unique NCI-supported resource that provides human tissues and fluids from routine procedures to investigators who utilize human biospecimens in their research. Unlike tissue banks, the CHTN works prospectively with each investigator Read More...
Frederick, MD
Core Facility
The FNLCR Molecular Histopathology Laboratory (MHL) provides comprehensive veterinary pathology support for animal health monitoring, biomarker discovery and validation, drug development, genomics, and proteomics on a cost recovered basis. The MHL is organized into multiple Read More...
Bethesda, MD
Collaborative
Repositories
The National Clinical Trials Network Biospecimen Banks (NCTN) receive, store, and distribute human cancer biospecimens collected on NCTN clinical trials. NCTN Biobanks provide cancer researchers with quality, well-annotated biospecimens and associated clinical information. The NCTN Read More...
ROCKVILLE, MD
Repositories
Trans NIH Facility
The Specimen Resource Locator (SRL) is a biospecimen resource database designed to help researchers locate resources that may have the samples needed for their investigational use. This publicly searchable database includes information about biospecimen banks Read More...
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The Genomics Laboratory (formerly Laboratory of Molecular Technology) is an integrated, high-throughput molecular biology laboratory focusing on the development of genetics and genomics technologies, together with associated laboratory automation systems, data analysis, and information management Read More...
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Bioinformatics
03/27/2024 - DAVID (the Database for Annotation, Visualization and Integrated Discovery) provides a comprehensive set of functional annotation tools for investigators to understand the biological meaning behind large lists of genes acquired from high-throughput assays such Read More...
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Bioinformatics
Gene Expression Omnibus (GEO) (http://www.ncbi.nlm.nih.gov/geo/) Both microarray and sequencing data Sequence Read Archive (SRA) (http://www.ncbi.nlm.nih.gov/sra) All sequencing data (not necessarily RNA-Seq) ArrayExpress (https:// Read More...
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Bioinformatics
12/03/2020 - Register Registration is required to join this event. If you have not registered, please do so now. It has been established that over half of all cancer types are driven by DNA Copy Number Read More...
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Bioinformatics
10/22/2020 - Register Presenter: Dr. Sam Dougaparsad Field Application Scientist It has been established that over half of all cancer types are driven by DNA Copy Number Variants (CNVs). In this presentation, we will demonstrate the Read More...
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Bioinformatics
09/24/2020 - For the Advanced Training, topics covered depend upon survey results: find key hubs using over-connectivity analysis; using Microarray repository for gene comparisons against public data; building networks with MetaCore; constructing your own pathway maps; Read More...
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Bioinformatics
11/13/2017 - MetaCore™ is an integrated curated knowledge database and software suite for pathway analysis of experimental data and gene lists. The scope of data types includes microarray and sequence-based gene expression, SNPs and CGH arrays, Read More...
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Bioinformatics
04/26/2017 - The CCR Bioinformatics Training and Education Program (BTEP) is pleased to organize a workshop on Partek Genomics Suite for scientists at NCI-Frederick. Partek ® Genomics Suite ® is a versatile scientific software with an easy-to-use graphical Read More...
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Bioinformatics
10/03/2016 - The maximum number of registrations (25) allowed has been reached for this workshop. You will be put on the waitlist and informed if any cancellations do occur. You are welcome to come on the morning Read More...
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Bioinformatics
12/07/2015 - This 2-day course, which includes both lecture and hands-on components, will teach the basic concepts and practical aspects of RNA-Seq Data Analysis. Learn everything from experimental design to statistical analysis. This workshop will include Read More...
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Bioinformatics
12/01/2015 - REGISTRATION FULL - Please signup for Session 2 December 7/8 This 2-day course, which includes both lecture and hands-on components, will teach the basic concepts and practical aspects of RNA-Seq Data Analysis. Learn everything from experimental Read More...
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Bioinformatics
11/09/2015 - A Short Course in R for Biologists "A Short Course in R for Biologists" is a two-day course given in four three-hour sessions entitled: Introduction to R, Introduction to Bioconductor, Introduction to Read More...
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Bioinformatics
12/17/2014 - Day 1 - AM (9:30 AM – 12:30 PM) Ingenuity IPA - Basic Training ( Kate Wendelsdorf, Ph.D. - Ingenuity Pathway Analysis) Ingenuity IPA® is the industry leading software solution to model, analyze, and understand complex biological and Read More...
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Bioinformatics
06/20/2014 - NCI CCR http://bioinformatics.nci.nih.gov/training/ and the NIH Library Bioinformatics Support Program http://nihlibrary.nih.gov/Bioinformatics are partnering to sponsor training on the use of NCBI GEO Datasets to analyze Read More...
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Bioinformatics
09/17/2013 - Ingenuity Pathways Analysis (IPA) is software that helps researchers model, analyze, and understand the complex biological and chemical systems at the core of life science research. Agenda for Day 1 (Tuesday September 17th) Large Scale ( Read More...
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Bioinformatics
04/16/2013 - Gene Set Enrichment Analysis (GSEA) is a computational method that determines whether an a priori defined set of genes shows statistically significant, concordant differences between two biological states (e.g. phenotypes). Using gene sets, Read More...
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Bioinformatics
03/12/2013 - Using pathway analysis in MetaCore/GeneGO to evaluate glioma subtypes from public gene expression data MetaCore from GeneGo is an integrated software suite for functional analysis of microarray, metabolic, SAGE, proteomics, siRNA, microRNA, and Read More...
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Bioinformatics
11/14/2012 - This is a repeat class for those who couldn't make it into the class on October 9th Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Partek Pathway. As Read More...
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Bioinformatics
10/09/2012 - Learn the basics of microarray gene expression analysis using Partek Genomics Suite and Partek Pathway. As we walk though hands-on analysis of a cancer dataset, you will learn the principles of experimental design, batch Read More...
Web Page
Bioinformatics
Ingenuity Pathway Analysis (IPA) (Qiagen) IPA works with differential expression data (derived from RNA sequencing, miRNA sequencing, microarray, proteomics, phosphoproteomics, or metabolomics) or genetic variant data to extract various biological insights. {{Sdet}}{{Ssum}}Listing of Read More...
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Bioinformatics
Partek Flow (Partek) is a graphical user interface (GUI) based bioinformatics software that is dedicated to the analysis of next generation sequencing (NGS) data. It can perform the analyses listed below. {{Sdet}}{{Ssum}}List of Read More...
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Bioinformatics
statistically evaluates the fraction of genes in a particular pathway found among the set of genes showing changes in expression --- Khatri et al. 2012 From this, ORA determines which pathways are over or under represented Read More...
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Bioinformatics
{{Sdet}}{{Ssum}}Gene expression by microarray{{Esum}} CLC Genomics Workbench What file types can I start my analysis with? Affymetrix Gene Chip (CHP, NetAFFx, CEL) Illumina BeadChip TSV CSV Partek Flow What file types can Read More...
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QIAGEN Ingenuity Pathway Analysis (IPA) works with differential expression data (NGS, microarray, proteomics, and others) or genetic variant data to extract various biological insights. QIAGEN Ingenuity Pathway Analysis (IPA) High Impact Features and Functionality in Read More...
Frederick, MD
Core Facility
The centrally funded Statistics team within the Advanced Biomedical Computational Science group at the Frederick National Lab provides statistical consultation and data analysis support for NCI laboratories. We have broad-range expertise in biomedically relevant areas Read More...
Bethesda, MD
Collaborative
The CCR Collaborative Bioinformatics Resource (CCBR) is a centrally funded resource group which provides a mechanism for CCR researchers to obtain many different types of bioinformatics assistance to further their research goals. The group has Read More...
Bethesda, MD
Trans NIH Facility
The NIH Biowulf Cluster provides researchers with a world-class system to assist in solving complex biomedical problems as diverse as gene variation in worldwide human populations, deep learning to model protein structures, and PET brain Read More...
Rockville, MD
Collaborative
We are a bioinformatics team within the Center for Biomedical Informatics and Information Technology’s (CBIIT’s) Cancer Informatics Branch (CIB)—soon to be referred to as the Informatics and Data Science (IDS) Program. Headed Read More...
Frederick, MD
Core Facility
The Advanced Biomedical Computational Sciences (ABCS) group provides technology development, scientific consultation, collaboration and training, research, software development, and high-performance computing support. ABCS encompasses specialized groups focusing on machine learning applied to the interpretation of 2 Read More...
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Bioinformatics
Resources Tertiary Analysis - Biological Meaning Pathway Analysis IPA (Qiagen - CCR License) Future talk Functional Analysis Gene Set Enrichment Analysis (GSEA) https://www.gsea-msigdb.org/gsea/index.jsp DAVID https://david.ncifcrf.gov/ Enrichr Read More...
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Bioinformatics
05/25/2022 - Dr. Peng Jiang of NCI’s Center for Cancer Research will discuss CytoSig , a software-based platform that is designed to provide both a database of target genes modulated by cytokines (i.e., proteins secreted Read More...
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Bioinformatics
02/20/2020 - Learn how to easily analyze your gene expression data yourself - using Qlucore Omics Explorer NCI/CCR:To get access to Qlucore, put a request into NCI at Your Service under Get Help https:// Read More...
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Bioinformatics
09/26/2019 - Qlucore Omics Explorer is an interactive analysis and visualization tool that helps the user to find groups, structures, variable networks and discriminating variables. You can use your own data and analyze public data. Omics Read More...
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Bioinformatics
05/22/2017 - Driven by the decreasing costs and increasing performance of next-generation sequencing (NGS) technologies, the amount of available genomic data has grown exponentially in recent years. While most of the analyses of these data is Read More...
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Bioinformatics
03/29/2017 - The CCR Bioinformatics Training and Education Program (BTEP) is pleased to organize a workshop on Partek Flow for scientists at NCI-Frederick . Partek Flow software is designed specifically for the analysis needs of next generation Read More...
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Bioinformatics
03/20/2017 - BTEP Workshop on RNA-Seq Data Analysis (2-day) This 2-day workshop, which includes both lecture and hands-on components, will cover the fundamentals of and best practices for RNA-Seq Data Analysis. Learn everything from experimental design Read More...
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Bioinformatics
09/01/2016 - This 2-day workshop, including a BYOD (Bring Your Own Data) exercise, will provide an introduction and hands-on training for Cytoscape, which is an open source software platform for visualizing networks and integrating these networks Read More...
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Bioinformatics
04/04/2016 - This 2-day course, which includes both lecture and hands-on components, will teach the basic concepts and practical aspects of RNA-Seq Data Analysis. Learn everything from experimental design to statistical analysis. This workshop will include Read More...
Web Page
Bioinformatics
02/09/2016 - BTEP Workshop on Pathway Analysis with MetaCore NOTE: This is a Bring Your Own Computer (BYOC) class, and will be simultaneously shared via GoToMeeting with attendees at the Advanced Technology Research Facility (ATRF) in Read More...
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Bioinformatics
10/22/2015 - /* element spacing */ p, pre { margin: 0em 0em 1em; } /* center images and tables */ img, table { margin: 0em auto 1em; } p { text-align: justify; } tt, code, pre { font-family: 'DejaVu Sans Mono', 'Droid Sans Mono', 'Lucida Console', Consolas, Read More...
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Bioinformatics
01/29/2015 - /* element spacing */ p, pre { margin: 0em 0em 1em; } /* center images and tables */ img, table { margin: 0em auto 1em; } p { text-align: justify; } tt, code, pre { font-family: 'DejaVu Sans Mono', 'Droid Sans Mono', 'Lucida Console', Consolas, Read More...
Web Page
Bioinformatics
Partek Genomics Suite (Partek) is a graphical user interface (GUI) based bioinformatics package. It hosts a range of work flows that allow for gene expression, epigenetic, and association analysis. {{Sdet}}{{Ssum}}Listing of Analysis Functions{{ Read More...
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Bioinformatics
The CCR Collaborative Bioinformatics Resource (CCBR) is a resource group which provides a mechanism for CCR researchers to obtain many different types of bioinformatics assistance to further their research goals. The group has expertise in Read More...
Web Page
Bioinformatics
CLC Genomics Workbench (Qiagen) is a graphical user interface (GUI) based bioinformatics software. It houses tools for molecular biology and Next Generation Sequencing (NGS) analysis (see Listing of Analysis Functions below). {{Sdet}}{{Ssum}}Listing of Read More...
Frederick, MD
Core Facility
The Genomics Technology Laboratory is an integrated, high-throughput molecular biology laboratory focusing on the development of genetics and genomics technologies, data analysis, and information management tools, in support of CCR Investigators. The laboratory develops integrated Read More...
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Confocal
Our Team Tatiana S. Karpova Ph.D.Core Headkarpovat@nih.govBuilding 41, Room C615240-760-6637 David A. Ball Ph.D.Core Biologistballa@nih.govBuilding 41, Room B114D240-760-6577 Mohamadreza Fazel, Ph.D.Core Biologistmohamadreza. Read More...
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Bioinformatics
06/06/2016 - The 'NCBI Resources for CCR Scientists' workshop, on June 6 and June 8, 2016, will focus on teaching a wide range of resources developed within NCBI that are relevant for CCR scientists. It will include both hands-on Read More...