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Search Results for: ffpe blocks

Total Results Found: 47

Total Results Found: 47

Cooperative Human Tissue Network (CHTN)
Bethesda, MD

Repositories

Trans NIH Facility

The CHTN is a unique NCI-supported resource that provides human tissues and fluids from routine procedures to investigators who utilize human biospecimens in their research. Unlike tissue banks, the CHTN works prospectively with each investigator Read More...

NCI Specimen Resource Locator (SRL)
ROCKVILLE, MD

Repositories

Trans NIH Facility

The Specimen Resource Locator (SRL) is a biospecimen resource database designed to help researchers locate resources that may have the samples needed for their investigational use. This publicly searchable database includes information about biospecimen banks Read More...

Spatial Biology

Web Page

Employing spatial biology techniques enables acquisition of transcript and protein data from intact tissue sections, and in turn, spatial distribution information and cellular interaction patterns are revealed.

Data Visualization in ggplot

Web Page

Bioinformatics

09/17/2024 - This hour and half online training will explore the topics of perception and cognition, and how these apply to data visualization. This class will also teach you how to visualize your data using ggplot2. Read More...

R Introductory Series: Course Expectations

Web Page

Bioinformatics

The course will include a series of eight lessons taught in 1-hour blocks over four weeks. Lessons will be on Tuesdays and Thursdays at 1 pm. Each lesson will be followed by an optional 1-hour help Read More...

R Introductory Series: Getting Started

Web Page

Bioinformatics

Quarto is installed with the latest versions of RStudio. When rendering a Quarto document (.qmd file), the code blocks are processed using either knitr or jupyter , which is converted to markdown. That markdown is then Read More...

NIH Spatial Transcriptomics Showcase

Web Page

Bioinformatics

11/01/2022 - Join us to learn how Visium Spatial and Xenium In Situ platforms from 10x Genomics can help you push the boundaries of your research. Uncover molecular insights, dissect cell-type differences, investigate the adaptive immune Read More...

BTEP Coding Club: Getting Started

Web Page

Bioinformatics

When rendering a Quarto document (.qmd file), the code blocks are processed using either knitr or jupyter, which is converted to markdown. That markdown is then converted to the final format using pandoc. Image modified Read More...

BTEP Coding Club: Getting Started

Web Page

Bioinformatics

When rendering a Quarto document (.qmd file), the code blocks are processed using either knitr or jupyter, which is converted to markdown. That markdown is then converted to the final format using pandoc. Image modified Read More...

BTEP Coding Club: Add executable codeblocks

Web Page

Bioinformatics

### Load the libraries ```{{r}} #| message: false library(EnhancedVolcano) library(dplyr) ``` ### Load the data from command line arguments The data were filtered to remove adjusted p-values that were NA; these were genes excluded by `DESeq2` as Read More...

Visium Spatial Gene Expression Technology

Web Page

What is Visium FFPE v2 with CytAssist? Visium FFPE v2 is sequencing-based spatial profiling technology developed by 10x Genomics. This assay can take mouse or human tissue sections on normal glass slides as input and Read More...

Spatial Biology

Web Page

Employing spatial biology techniques enables acquisition of transcript and protein data from intact tissue sections, and in turn, spatial distribution information and cellular interaction patterns are revealed.

Spatial Biology

Web Page

Employing spatial biology techniques enables acquisition of transcript and protein data from intact tissue sections, and in turn, spatial distribution information and cellular interaction patterns are revealed.

Introduction to Quarto for Scholarly Publishing

Web Page

Bioinformatics

03/04/2024 - This class is designed for those who want to extend the basics of R Markdown and apply those skills in Quarto. Quarto is an open-source scientific and technical publishing system that offers multilingual programming Read More...

BTEP Coding Club: Add executable codeblocks

Web Page

Bioinformatics

### Load the libraries ```{{r}} library(EnhancedVolcano) library(dplyr) ``` ### Load the data from command line arguments We are also filtering the data to remove adjusted p-values that were NA; these were genes excluded by `DESeq2` as Read More...

BTEP Coding Club: Add commentary with markdown

Web Page

Bioinformatics

Without adding text, images, links, and other components, the Quarto document wouldn't be very useful. Prose can be added using markdown language; again, see the basics here. # Volcano Quarto Demonstration Here we will create Read More...

BTEP Coding Club: yaml header

Web Page

Bioinformatics

The yaml header or file allows us to control document level or project level options. Here, we can specify formats, themes, executable options, and others. --- title: "Volcano" author: "Alex Emmons, Ph. Read More...

CLIA Molecular Diagnostics Laboratory
Frederick, Maryland

Core Facility

CLIA-Certified Technologies Offered: Fragment Analysis for Micro-satellite Instability Detection, Pharmacoscan Array for Pharmacogenomics, Mutation Detection for PCR and Sanger Sequencing, DNA extraction from whole blood, saliva, FFPE tissues, buccal swabs, nails, hair, PBMCs, buffy coats, Read More...

NanoString GeoMX Digital Spatial Profiler

Web Page

Biomarker Discovery with Morphological Context:  Changing how tissue specimens are analyzed < https://youtu.be/mVhfZq8ppbc What is Digital Spatial Profiling? GeoMx Digital Spatial Profiler is a novel platform developed by NanoString. Digital Spatial Read More...

CLIA Molecular Diagnostics Laboratory (CMDL)

Web Page

The CLIA Molecular Diagnostics Laboratory (CMDL) provides an array of services for groups at the NIH Clinical Center, Fort Detrick, and Hood College, among others. They support cancer- and disease-related research by making Read More...

CCR Genomics Core
Bethesda, MD

Core Facility

The CCR Genomics Core is located in Building 41 on the NIH Bethesda campus. The primary goal of the Core is to provide investigators from CCR/NCI and other NIH Institutes access to genomic technologies and Read More...

NCI Genetics Branch: OMICS Technology Facility
Bethesda, MD

Collaborative

Our operational objectives are to provide state-of-the-art OMICS technologies in support of the Genetics Branch (GB) investigators and collaborators. Research Services Wet Lab Single cell isolation from fresh, frozen, and FFPE tissue, DNA/RNA extractions Read More...

R Introductory Series: Course Overview

Web Page

Bioinformatics

Course Overview Welcome to the R Introductory Series! A series of introductory lessons in R for scientists. This course will include a series of lessons for individuals new to R or with limited R experience . Read More...

R Introductory Series 2023: Course Overview

Web Page

Bioinformatics

Course Overview Welcome to the R Introductory Series 2023 A series of introductory lessons in R for scientists. This course will include a series of lessons for individuals new to R or with limited R experience . Read More...

Xenium Spatial Profiling Technology

Web Page

What is Xenium? Xenium is a high-resolution, imaging-based in situ spatial profiling technology from 10x Genomics that allows for simultaneous expression analysis of RNA targets (currently in range of 100’s) within the same tissue section. Read More...

CCR Genomics Technology Laboratory (GTL)
Frederick, MD

Core Facility

The Genomics Technology Laboratory is an integrated, high-throughput molecular biology laboratory focusing on the development of genetics and genomics technologies, data analysis, and information management tools, in support of CCR Investigators. The laboratory develops integrated Read More...

CCR Spatial Imaging Technology Resource (SpITR)
Bethesda, MD

Collaborative

The Spatial Imaging Technology Resource (formerly the Nanoscale Protein Analysis Section of the Collaborative Protein Technology Resource or CPTR) provides expertise and service in state-of-the-art protein analysis technologies to advance CCR research in basic discovery Read More...