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Bioinformatics
06/25/2025 - Join tony Brook Univer ity&r quo; Dr. Joel altz a he di cu e : the role of pathology artificial intelligence (AI) in the creation of pathology imaging biomarker , including tumor infiltrating lymphocyte Read More...
Bethesda, MD
Trans NIH Facility
The Pathology Service, Division of Veterinary Resources (DVR), Office of Research Services (ORS), provides diagnostic gross and histopathologic evaluation of any species of laboratory animals used in the NIH Intramural Research Program due to morbidity, Read More...
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Bioinformatics
12/12/2024 - Please join us on Thursday, December 12 at 9AM EST for a NCI CCR Liver Cancer Program (LCP) virtual seminar by Dr. Julien Calderaro entitled & Read More...
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Bioinformatics
10/10/2024 - Digital Pathology has advanced significantly in the past decade, evolving beyond assisting pathologists to now informing molecular and genetic properties of tumors. Recent breakthroughs in machine learning and AI, particularly in big data and Read More...
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Bioinformatics
06/06/2022 - Join the June NCI Imaging and Informatics Community Webinar for a discussion on the recent contributions from Dr. Mirabela Rusu’s Personalized Integrative Medicine Laboratory (PIMed) at Stanford University. Recent laboratory contributions include: registering Read More...
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Bioinformatics
06/15/2021 - Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=m8f1460fe5079163dd2a2a4e2641c227f TOPIC: AI in Image Analysis, presented by CCR: AIR and High Throughput Imaging Facility Deep Read More...
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Bioinformatics
06/15/2021 - Registration: https://btep.ccr.cancer.gov/classes/ai_two/ Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=m8f1460fe5079163dd2a2a4e2641c227f Description: Deep learning is a subclass Read More...
Bethesda, Maryland
Collaborative
The Molecular Pathology Unit is intended to spearhead opportunities for bridging basic and clinical research efforts by more precisely optimizing the development, characterization, and utilization of models of human disease. The initiative approach includes both Read More...
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Bioinformatics
03/06/2024 - The NCI Cancer Diagnosis Program in the Division of Cancer Treatment and Diagnosis is hosting a workshop, “Digital Pathology Imaging (DPI) in Cancer Clinical Trials and Research.” This workshop will Read More...
Frederick, MD
Core Facility
The Animal Diagnostic Laboratory (ADL) provides a full range of diagnostic capabilities, including microbiological cultures on various culture medium, microscopic screening for parasites such as mites and pinworms, molecular detection of pathogens, serological evaluation of Read More...
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Bioinformatics
11/16/2022 - Join Drs. Jennifer E. Beane-Ebel and Vijaya B. Kolachalama of Boston University as they discuss their studies of pathological and molecular alterations associated with lesion severity and progression. Topics include deep learning methods for Read More...
Bethesda, MD
Collaborative
The Clinical Flow Cytometry Laboratory provides extensive support for NCI clinical protocols by providing diagnostic testing for leukemia and lymphoma in patients either on NCI clinical protocols or undergoing testing to determine eligibility for NCI Read More...
Bethesda, MD
Core Facility
Trans NIH Facility
Radiology and Imaging Sciences provides imaging services for National Institutes of Health (NIH) Clinical Center patients participating in research protocols conducted by the various NIH institutes. Services include X-rays, fluoroscopy, ultrasound, magnetic resonance imaging (MRI) Read More...
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Bioinformatics
03/01/2024 - Jens Rittscher is Professor of Engineering Science at the University of Oxford with his appointment held jointly between the Institute of Biomedical Engineering and the Nuffield Department of Medicine. He is a group leader Read More...
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Bioinformatics
10/26/2023 - Additional Connection information: Meeting ID: 248 393 722 628 Passcode: kcALva
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Bioinformatics
11/06/2024 - Neuro-Oncology Branch Visiting Scholar Program Lecture
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Bioinformatics
09/26/2024 - Dr. Turkbey will discuss radiology, pathology, and multimodal AI models his NCI lab has developed for prostate cancer diagnosis and prognosis prediction.
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Bioinformatics
04/15/2025 - The Demystifying Medicine Series, jointly sponsored by FAES and NIH, includes presentations on pathology, diagnosis, and therapy in the context of major disease problems and current research. Primarily directed toward PhD students, clinicians and Read More...
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Bioinformatics
11/26/2024 - This talk will introduce quantum chemistry and how it is useful for the modeling of therapeutic and diagnostic agents. This session is geared towards beginners. This session will be recorded, and materials will be Read More...
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Bioinformatics
Dendrograms are used in phylogenetics to help visualize relatedness of or dissimilarities between species. In RNA sequencing, dendrogram can be combined with heatmap to show clustering of samples by gene expression or clustering of genes Read More...
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Bioinformatics
Dendrograms are used in phylogenetics to help visualize relatedness of or dissimilarities between species. In RNA sequencing, dendrogram can be combined with heatmap to show clustering of samples by gene expression or clustering of genes Read More...
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Bioinformatics
11/02/2022 - Join Emory University’s Dr. Anant Madabhushi as he discusses the Center for Computational Imaging and Personalized Diagnostics ’ (CCIPD’s) development work on new radiomic and pathomic approaches for capturing intra-tumoral heterogeneity and modeling Read More...
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Bioinformatics
09/23/2021 - Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=m5fa0e43ae167ed5ea3a77fb25d339a82 TOPIC: AI for Multimodal Data, presented by members of the Strategic Data Science Initiative, Read More...
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Bioinformatics
11/17/2020 - Please join us for a brief overview of NCI’s HALO cloud deployment and the first in a series of talks describing HALO-enabled research. Dr. Noemi Kedei, MD, CCR, will cover examples of using Read More...
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Citation: Patkar S, et al. American Journal of Pathology 2023 Code Availability: https://github.com/spatkar94/adversarialdogs.git
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Citation: Arlova A, et al. Journal of Pathology Informatics 2022 Code Availability: https://github.com/ NIH-MIP/WSI_LungTumorSeg
Frederick, MD
Core Facility
The FNLCR Molecular Histopathology Laboratory (MHL) provides comprehensive veterinary pathology support for animal health monitoring, biomarker discovery and validation, drug development, genomics, and proteomics on a cost recovered basis. The MHL is organized into multiple Read More...
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Bioinformatics
03/29/2021 - For coming Monday's CDSl webinar, we'll be hosting Dr. Yun Liu from Google Health. Abstract: This talk will briefly cover two categories of our work: deep learning to identify dermatology conditions from Read More...
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Bioinformatics
07/09/2025 - From image analy i to federated learning and multimodal modeling, generative AI can be u ed to tudy ob ervational ucce ion acro cale and data type . At DCEG' Data cience and Engineering Re Read More...
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Bioinformatics
10/29/2024 - In this presentation, you will get an overview of the Cancer Digital Slide Archive (CDSA) platform. CDSA is an open source, web-based platform for storage, visualization, and management of digitized whole slide images.& Read More...
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Bioinformatics
05/06/2024 - Have you been looking for ways to use artificial intelligence (AI) in clinical practice but not sure where to start? Attend this webinar for tips from Dr. Anant Madabhushi on applying AI in precision Read More...
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Bioinformatics
12/12/2023 - Dr. Anant Madabhushi and his team have been developing computerized knowledge alignment, representation, and fusion tools for integrating and correlating heterogeneous biological data spanning different spatial and temporal scales, modalities, and functionalities. These tools Read More...
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Bioinformatics
09/08/2023 - This seminar will discuss how we can leverage shared data to discover signatures of human vaccination and infection responses. A key example will be work done as part of the NIH Human Read More...
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Bioinformatics
Dendrograms are used in phylogenetics to help visualize relatedness of or dissimilarities between species. In RNA sequencing, dendrogram can be combined with heatmap to show clustering of samples by gene expression or clustering of genes Read More...
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Bioinformatics
11/07/2022 - Join University of Maryland’s Dr. Eliot Siegel for the upcoming November NCI Imaging and Informatics Community Webinar (IICW). This presentation will address the gaps of applying artificial intelligence (AI) into clinical practice as Read More...
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Bioinformatics
09/22/2022 - The avalanche of easy-to-create genomics data has impacted almost all areas of medicine and science, from cancer patients and microbial diagnostics to molecular monitoring for astronauts in space. In this lecture, new discoveries from Read More...
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Bioinformatics
08/10/2022 - For our next CDSL webinar we will have two fellows’ talks from Dr. Zisha Zhong and Arati Rajeevan . Zisha’s talk details: Title: Multi-task Feature Learning to train Interpretable Encoders on Histopathology Images Digital Read More...
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Bioinformatics
07/14/2022 - The efforts of our laboratory are split evenly between experimental and computational biology. We develop new experimental methods to sequence single cells and isolate rare subpopulations and develop new analytical approaches to detect variants Read More...
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Bioinformatics
05/19/2022 - THIS EVENT HAS BEEN CANCELLED Rhabdomyosarcoma (RMS) is the most common soft tissue sarcoma of childhood and are subdivided into three major histomorphologic subtypes: alveolar (ARMS), embryonal (ERMS), or spindle/sclerosing (SSRMS). Patients with Read More...
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Bioinformatics
01/25/2022 - Speaker: Anant Madabhushi, Ph.D. Donnell Institute Professor of Biomedical Engineering Director, Center for Computational Imaging and Personalized Diagnostics (CCIPD) Case Western Reserve University (CWRU), Cleveland Anant Madabhushi, PhD, is a Research Scientist at Read More...
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Bioinformatics
11/16/2021 - The NCI HALO cloud deployment provides NCI researchers with powerful image management and analysis tools for digital pathology and numerous other 2D imaging applications. Key capabilities include expert user assessment, image archiving, and advanced Read More...
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Bioinformatics
09/28/2021 - Attend this webinar to hear from Dr. Arul Chinnaiyan, molecular pathologist and physician scientist who leads a multi-disciplinary team of investigators at the Michigan Center for Translational Pathology. He and his team work to Read More...
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Bioinformatics
09/23/2021 - Registration: https://btep.ccr.cancer.gov/classes/ai_four/ Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=m5fa0e43ae167ed5ea3a77fb25d339a82 Description: In this talk, we Read More...
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Bioinformatics
09/16/2021 - As a continuation of the NHGRI seminar series focused on the “Bold Predictions for Human Genomics by 2030,” please join us for the seventh seminar in the series on Thursday, September 16 from 3:00 – 4:30 pm ET. This Read More...
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Bioinformatics
04/22/2021 - Presenter: Dr. Bernadette Redd is Lead Radiologist, Body MRI, Radiology and Imaging Sciences, at the NIH Clinical Center. Dr. Redd earned her Doctorate in Medicine from the Columbia University College of Physicians and Surgeons Read More...
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Bioinformatics
09/21/2020 - Join Zoom Meeting BIO: Jean Claude Zenklusen was born 1964 in Visp, Switzerland. He earned a Master in Sciences (Biochemistry) from the University of Buenos Aires in 1990. He received his PhD in Cancer Biology & Read More...
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Bioinformatics
07/07/2020 - In systems biology, inference of functional associations among genes is compelling because the construction of functional association networks facilitates biomarker discovery. Specifically, such gene associations in human can help identify putative biomarkers that can Read More...
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Bioinformatics
02/27/2020 - In this symposium, distinguished scientists will share recent successes in their research to visualize RNA targets at the single molecule level with single cell resolution and morphological context. Here are some of the exciting Read More...
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Partek Genomics Suite is a comprehensive suite for advanced statistics and interactive data visualization, specifically designed to reliably extract biological signals from noisy data.Partek Genomics Suite is a comprehensive suite of advanced statistics and Read More...
Bethesda, MD
Trans NIH Facility
The Division of Veterinary Resources’ (DVR) mission is to contribute to the advancement of NIH biomedical research programs by providing excellence in animal care, customer service, and specialized research services to support intramural research efforts. Read More...
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CREx News & Updates June 2021 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Collaborative Research Exchange (CREx) News Site Spotlight FACILITY HIGHLIGHTS Visit here to learn about services from Read More...
Bethesda, MD
Trans NIH Facility
The Clinical Image Processing Service (CIPS) offers timely and accurate advanced image processing of diagnostic radiology images for clinical care, research, and training. CIPS’ functions include clinical services and scientific researches. Established Technologies: CIPS can Read More...
Bethesda, MD
Collaborative
The Office of Collaborative Biostatistics, Office of the Clinical Director, is the statistical and data management component of CCR. The Section provides statistical leadership and data management consultation for CCR’s major clinical activities and Read More...
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Bioinformatics
03/26/2025 - Developing artificial intelligence (AI) schemes to assist the clinician towards enabling precision medicine approaches requires development of objective markers that are predictive of disease response to treatment or prognostic of longer-term patient survival. The Read More...
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Bioinformatics
10/24/2024 - Recent advances in artificial intelligence (AI) have revolutionized the use of hematoxylin and eosin (H&E)-stained tumor slides for precision oncology, enabling data-driven approaches to predict molecular characteristics and therapeutic outcomes. In Read More...
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Bioinformatics
04/23/2024 - Dr. Stephanie Harmon obtained her Ph.D. in medical physics at the University of Wisconsin–Madison and did her postgraduate training at Leidos Biomedical Research where she worked within the Molecular Imaging Read More...
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Bioinformatics
10/19/2022 - Speaker: Ron Germain, M.D., Ph.D. NIH Distinguished Investigator NIAID, NIH Dr. Germain received his Sc.B. and Sc.M. from Brown University in 1970 and his M.D. and Ph.D. from Harvard Read More...
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Bioinformatics
09/22/2022 - The avalanche of easy-to-create genomics data has impacted almost all areas of medicine and science, from cancer patients and microbial diagnostics to molecular monitoring for astronauts in space. In this lecture, new discoveries from Read More...
Web Page
Bioinformatics
07/14/2022 - Nicholas Navin, Ph.D. Professor, Department of Genetics, Division of Basic Science Research, The University of Texas MD Anderson Cancer Center Grady F. Saunders, Ph.D. Distinguished Professorship for Molecular Biology, Department of Genetics, Read More...
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Bioinformatics
05/26/2022 - Want to learn about the latest data science technologies and immunotherapy research? In partnership with NCI’s Cancer Moonshot SM Initiative, the Society for Immunotherapy of Cancer (SITC) and the Big Data and Data Read More...
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Bioinformatics
05/12/2022 - The Eunice Kennedy Shriver National Institute of Child Health and Human Development (NICHD) Office of the Scientific Director invites you to the Division of Intramural Research (DIR) Tenure-Track Investigator Virtual Symposia Series. Speakers: Timothy Read More...
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Bioinformatics
04/27/2022 - In partnership with NCI’s Cancer Moonshot SM Initiative, the Society for Immunotherapy of Cancer (SITC) and the Big Data and Data Sharing Committee are hosting the second of nine webinars that make up Read More...
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Bioinformatics
09/29/2021 - This NIH-FDA sponsored workshop will bring together members of the scientific community to discuss the obstacles and opportunities associated with NGS and radiomics tool development, validation, and regulatory science. NCI presenters include NCI Director, Read More...
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Bioinformatics
09/10/2021 - The National Institutes of Health (NIH) Office of Data Science Strategy hosts a seminar series to highlight exemplars of data sharing and reuse on the second Friday of each month at noon ET. The Read More...
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Bioinformatics
06/16/2021 - Please mark your calendar for the next Neuro-Oncology Branch Visiting Scholar Lecture Series: CNS Malignancies: From Basic Biology to Clinical Applications . We are pleased to have Prof. Mario L. Suva, join us via WebEx Read More...
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Bioinformatics
05/03/2021 - Abstract: We will discuss technical advantages of a personalized and tumor-informed multiplex PCR next generation sequencing assay, called Signatera™, that enables a sensitive, specific, and dynamic detection of molecular disease burden in cell-free DNA ( Read More...
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Bioinformatics
08/10/2020 - Copy Number Variation (CNV) is a type of structural variation in which sections of the genome are duplicated or deleted. Associated with being causal mutations for disease phenotypes, it is important in clinical and Read More...
Web Page
Bioinformatics
07/07/2020 - In systems biology, inference of functional associations among genes is compelling because the construction of functional association networks facilitates biomarker discovery. Specifically, such gene associations in human can help identify putative biomarkers that can Read More...
Web Page
Bioinformatics
06/03/2020 - The COVID-19 pandemic, caused by the novel coronavirus SARS-CoV-2, creates an urgent need for identifying molecular mechanisms that mediate viral entry, propagation, and tissue pathology. Single-cell analysis of healthy- and SARS-CoV-2-infected tissues offers Read More...
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Bioinformatics
06/16/2000 - We present the AMARETTO-Hub as a Knowledge Graph-based software platform that leverages Neo4j and Shiny to embed and interactively interrogate results generated by the *AMARETTO software toolbox that offers modular and complementary solutions Read More...
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Bioinformatics
Data collected for a specific case in TCGA may have differed according to sample quality and quantity, cancer type, or technology available at the time of analysis. --- https://www.cancer.gov/ccg/research/genome-sequencing/ Read More...
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Bioinformatics
The column "drwr-x---" in the above results from ls -1 tells us the permission (ie. who can read - r, write - w, or execute - x contents of the file or directory), Read More...
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Bioinformatics
The command for modifying permissions is chmod. If we append --help to chmod, then we can see how to use it. chmod --help Usage: chmod [OPTION]... MODE[,MODE]... FILE... or: chmod [OPTION]... OCTAL-MODE FILE... or: Read More...
Charlottesville, VA
Repositories
Trans NIH Facility
The Mid-Atlantic CHTN is one of six participating divisions of the Cooperative Human Tissue Network (CHTN) and is based in the Pathology Department at the University of Virginia. While primarily a resource for cancer researchers, Read More...
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The Genomics Laboratory (formerly Laboratory of Molecular Technology) is an integrated, high-throughput molecular biology laboratory focusing on the development of genetics and genomics technologies, together with associated laboratory automation systems, data analysis, and information management Read More...
Bethesda, MD
Trans NIH Facility
The Division of Veterinary Resources Animal Surgery has supported large animal research and clinical care for more than 40 years. DVR surgeons provide outstanding and highly specialized large animal (rabbits, ungulates, etc.) research support in a Read More...
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CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New NIH Resource Resources Advance your research with the NIH Mouse Imaging Facility (MIF) The NIH Mouse Imaging Read More...
Frederick, MD
Core Facility
The Genomics Technology Laboratory is an integrated, high-throughput molecular biology laboratory focusing on the development of genetics and genomics technologies, data analysis, and information management tools, in support of CCR Investigators. The laboratory develops integrated Read More...
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CREx News & Updates September 2021 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Collaborative Research Exchange (CREx) News Site Spotlight FACILITY HIGLIGHTS Learn more about services from the CCR Read More...
Bethesda, MD
Core Facility
The Genomics and Pharmacology Facility is part of the NCI's Center for Cancer Research (CCR), within the Developmental Therapeutics Branch. Its mission is to manage and assess molecular interaction data obtained through multiple platforms, increase Read More...
Frederick, MD
Core Facility
Repositories
The Mouse Modeling Core assists NIH investigators by generating and preserving genetically-engineered mouse strains. Services include scientific consultation, gene-targeting in mouse embryonic stem cells, micro-injection of nucleic acids, proteins, or ES cells into mouse embryos, Read More...
Bethesda, MD
Collaborative
The Pan-Microbial Serology Facility (PMSF) is part of the Center for Cancer Research (CCR) at the National Cancer Institute (NCI). The PMSF focuses on determining individualized pan-microbial immune profiles associated with human diseases including immunological Read More...
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CREx News & Updates May 2022 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Click below to learn how easy it is to navigate the CREx platform. These short videos will Read More...
Frederick, MD
Collaborative
The Center for Advanced Preclinical Research (CAPR) specializes in evaluating the efficacy of preclinical compounds, existing drugs, or biologics (therapeutics) in genetically engineered mouse models, GEM-derived allograft (GDA) models, or patient-derived mouse xenografts (PDX). We Read More...
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Bioinformatics
Listed below are the video recordings of past BTEP events (classes, seminars, workshops). Videos are hosted on various servers and may play slightly differently. Some videos may be downloaded for local viewing. Recorded Videos of Read More...
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Bioinformatics
Visualizing clusters with heatmaps Objectives Introduce the heatmap and dendrogram as tools for visualizing clusters in data. Learn to construct cluster heatmap using the package pheatmap . Learn how to save a non-ggplot2 plot. Introduce ggplotify Read More...
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Bioinformatics
Visualizing clusters with heatmaps Objectives Introduce the heatmap and dendrogram as tools for visualizing clusters in data. Learn to construct cluster heatmap using the package pheatmap . Learn how to save a non-ggplot2 plot. Introduce ggplotify Read More...
Web Page
Bioinformatics
Visualizing clusters with heatmaps Objectives Introduce the heatmap and dendrogram as tools for visualizing clusters in data. Learn how to work with the package pheatmap . Learn how to save a non-ggplot2 plot. Introduce ggplotify to Read More...