Bethesda, MD
Trans NIH Facility
MAB provides visual communication solutions across all media to the entire NIH community. Our Medical Illustration section provides a complete range of biomedical visualization services, including manuscript/textbook figures, infographics, 3D modeling, animation, technical diagrams, Read More...
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Bioinformatics
The lattice package is another prominent graphic system in R. Like ggplot2 this is also based on the grid package. For more information comparing the three plotting systems, see this chapter from Exploratory Data Analysis Read More...
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Bioinformatics
09/28/2023 - Attend the Bridge2AI-Skills & Workforce Development (SWD) Lecture Series for 2023-24 on the Large Language Model (LLM) Module Dr. Xia “Ben” Hu is an Associate Professor at Rice University in the Department of Read More...
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Bioinformatics
The lattice package is another prominent graphic system in R. Like ggplot2 this is also based on the grid package. For more information comparing the three plotting systems, see this chapter from Exploratory Data Analysis Read More...
Web Page
Bioinformatics
RStudio is an integrated development environment for R, and now python. RStudio includes a console, editor, and tools for plotting, history, debugging, and work space management. It provides a graphic user interface for working with Read More...
Web Page
Bioinformatics
RStudio is an integrated development environment for R, and now python. includes a console, editor, and tools for plotting, history, debugging, and work space management.\ provides a graphic user interface for working with R.\ freely Read More...
Web Page
Bioinformatics
RStudio is an integrated development environment for R, and now python. RStudio includes a console, editor, and tools for plotting, history, debugging, and work space management. It provides a graphic user interface for working with Read More...
Web Page
Bioinformatics
Learn how to use R with less interaction Learn how to deploy sbatch R jobs, and learn about alternatives such as swarm . Learn about R job parallelization in the context of Biowulf We have organized Read More...
Web Page
Bioinformatics
The goal of patchwork is to make it ridiculously simple to combine separate ggplots into the same graphic. As such it tries to solve the same problem as gridExtra::grid.arrange() and cowplot::plot_grid Read More...
Web Page
Bioinformatics
The goal of patchwork is to make it ridiculously simple to combine separate ggplots into the same graphic. As such it tries to solve the same problem as gridExtra::grid.arrange() and cowplot::plot_grid Read More...
Web Page
Bioinformatics
RStudio is an integrated development environment for R, and now python. RStudio includes a console, editor, and tools for plotting, history, debugging, and work space management. It provides a graphic user interface for working with Read More...
Web Page
Bioinformatics
There are two main Core facilities providing DNA sequencing services for CCR scientists. CCR Sequencing Facility Located at the ATRF in Frederick provides production quality high throughput sequencing service to the CCR community. Their service Read More...
Web Page
Bioinformatics
Alternative splicing is a crucial molecular process within eukaryotic cells whereby precursor messenger RNA (pre-mRNA) molecules are selectively modified, resulting in the production of multiple distinct mRNA transcripts from a single gene. This process allows Read More...
Web Page
Bioinformatics
Alternative splicing is a crucial molecular process within eukaryotic cells whereby precursor messenger RNA (pre-mRNA) molecules are selectively modified, resulting in the production of multiple distinct mRNA transcripts from a single gene. This process allows Read More...
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The NIH Intramural Research Program Collaborative Research Exchange (CREx) The Collaborative Research Exchange (CREx) is an online CCR marketplace where investigators can search, browse, and request information for research services, technologies, or custom products (antibody Read More...
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Bioinformatics
07/07/2025 - Thi hour-and-a-half online training will examine how human proce and encode vi ual information and how vi ual attribute can be utilized to create effective vi ualization . Thi will focu on enhancing graphic literacy, Read More...
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Bioinformatics
11/14/2023 - Dr. Ting Wang is a Sanford C. and Karen P. Loewentheil Distinguished Professor of Medicine at the McDonnell Genome Institute, Washington University School of Medicine in St. Louis. Dr. Wang’s lab Read More...
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Bioinformatics
06/29/2022 - The CCR Genomics, Sequencing and Single Cell Analysis Core Facilities are pleased to host a virtual technology seminar with Illumina. Presentation overview : For decades cancer methylation studies have provided insights into tumorigenic pathways and Read More...
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Bioinformatics
To run R on Biowulf, you have to log-in using VPN with Cisco AnyConnect Secure Mobility Client . Click Connect button and follow the instructions. Enter your authentication. At the terminal window, type ssh -Y user_ Read More...
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Bioinformatics
Running R in Biowulf Running R on Biowulf To run R on Biowulf, you have to log-in using VPN with Cisco AnyConnect Secure Mobility Client . Click Connect button and follow the instructions. Enter your authentication. Read More...
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Bioinformatics
R has a similar install and load method. If you wish to use a package in R , you can check if it's already installed by using the Package Manager. If it is listed, it Read More...
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Bioinformatics
Installing Packages in R Installing P ackages in R in Console R has a similar install and load method. If you wish to use a package in R , you can check if it's already Read More...
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Bioinformatics
Launch RStudio Desktop from the Applications folder as you did before. Click the + item (upper far-left in graphic below) and open a new R Script. In the upper-left pane, type the following command and click Read More...
Web Page
Bioinformatics
10/26/2021 - Meeting Link: https://cbiit.webex.com/cbiit/j.php?MTID=m14c6833bc06f89408464fac5bb2e8ce9 Human cells generate remarkable regulatory and functional complexity from a finite set of genes. Production of Read More...
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Bioinformatics
01/11/2021 - CBIIT provides two managed cloud environments for NCI. Cloud One is a managed Amazon Web Services platform and in full production with FISMA Moderate ATO. Cloud Two is a managed Google Cloud Platform with Read More...
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Bioinformatics
10/28/2020 - Register The Sequencing Facility (https://ostr.cancer.gov/resources/fnl-cores/sequencing-facility) is a second and third generation high-throughput sequencing core established by the Center for Cancer Research (CCR). Sequencing Facility’s (SF’s) primary Read More...
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Bioinformatics
03/12/2013 - Using pathway analysis in MetaCore/GeneGO to evaluate glioma subtypes from public gene expression data MetaCore from GeneGo is an integrated software suite for functional analysis of microarray, metabolic, SAGE, proteomics, siRNA, microRNA, and Read More...
Web Page
Bioinformatics
RStudio is an integrated development environment for R, and now python. RStudio includes a console, editor, and tools for plotting, history, debugging, and work space management. It provides a graphic user interface for working with Read More...
Web Page
Bioinformatics
NIDAP (NIH Integrated Data Analysis Platform) is an innovative, cloud-based, collaborative data aggregation and analysis platform that hosts user-friendly bioinformatics workflows and component analysis and visualization tools developed by the NCI developer community based on Read More...
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Protein Expression Laboratory The Protein Expression Laboratory develops, improves, and delivers protein-centric services. Our goal is to help client investigators achieve their research goals with the lowest possible cost in the shortest time. All PEL Read More...
Bethesda, MD
Trans NIH Facility
The Center for Inherited Disease Research (CIDR)'s mission is to support the genetics community by providing high-quality, cutting-edge genomics services and technologies in order to expand our understanding of disease and catalyze discoveries that Read More...
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CREx News & Updates December 2021 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Site Spotlight FACILITY HIGLIGHTS Learn more about services from the STRIDES Initiative. VIEW STRIDES INITIATIVE NIH Cores Read More...
Bethesda, MD
Core Facility
LCMB Microscopy Core offers live cell imaging technologies as well as super-resolution, fluorescence lifetime and confocal imaging systems for immunofluorescence. Our confocal instruments are a Leica SP8 laser scanning confocal microscope and a Nikon spinning Read More...
Frederick, MD
Core Facility
The FNLCR Molecular Histopathology Laboratory (MHL) provides comprehensive veterinary pathology support for animal health monitoring, biomarker discovery and validation, drug development, genomics, and proteomics on a cost recovered basis. The MHL is organized into multiple Read More...
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Bioinformatics
Long read sequencing was recently named 2022’s method of the year by Nature Methods . Long read sequencing technologies, those that generate sequence reads with lengths of 10s of kilobases or longer have several advantages over Read More...
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Bioinformatics
BTEP strives to maintain links to resources that should be of interest to CCR Bioinformatics Community. Some of the resources to will be accessible through more than one of these lists, but since the lists Read More...
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Bioinformatics
Welcome! Welcome to the R Introductory Series! Who: Novices and beginners\ What: A course series introducing R and RStudio. This course will introduce the foundational skills necessary to begin to analyze and visualize data in Read More...
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Bioinformatics
Installing Packages on RStudio Desktop A multitude of packages are available that extend the capability of R and RStudio Desktop, such as analysis packages and useful utilities. These packages are provided for your use by Read More...
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Bioinformatics
11/14/2017 - The CCR Office of Science and Technology Resources (OSTR), along with the Bioinformatics Training and Education Program (BTEP), are pleased to organize this event for the CCR scientific community. The primary goal of single Read More...
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Bioinformatics
06/19/2017 - Harvesting the Wealth of TCGA Data The Cancer Genome Atlas (TCGA) is a large-scale study that has catalogued genomic data accumulated from more than 20 different types of cancer including mutations, copy number variation, mRNA Read More...
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Bioinformatics
There are a number of core facilities available to NCI researchers. See more information from the Office of Science and Technology Resources. We most commonly see data from the following cores: CCR Sequencing Facility (CCR-SF) Read More...
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Bioinformatics
Note This is not an exhaustive list. cBioPortal cBioPortal is a platform for exploratory and interactive visualization, analysis, and download of cancer genomics data. With cBioPortal You can quickly view genomic alterations across a set Read More...
Bethesda, MD
Trans NIH Facility
The NIH Library is a biomedical research library, whose collection and services are available at no cost to NIH staff: Electronic Resources: Over 20,000 electronic journals, 190,000 eBooks, and 50 databases. , Training classes covering topics such as bioinformatics, Read More...
Frederick, Maryland
Core Facility
Repositories
The Biological Products Core provides the AIDS research community with high-quality purified preparations of various strains of Human Immunodeficiency Virus (HIV) and Simian Immunodeficiency Virus (SIV), economically prepared by leveraging the economy of scale. Materials Read More...
Frederick, MD
Core Facility
NCI LASP Animal Research Technology Support (ARTS) provides customized technical support for basic and translational animal-based research to the scientific community. We offer a wide array of services ranging from expert colony management to the Read More...
Frederick, MD
Core Facility
The Laboratory Animal Sciences Program (LASP) of the Frederick National Laboratory operates a Gnotobiotics Facility (GF) to support research focused on the role of microbiota in cancer inflammation, pathogenesis, and treatment response. The GF can Read More...
Bethesda, MD
Trans NIH Facility
The Science and Technology Research Infrastructure for Discovery, Experimentation, and Sustainability (STRIDES) Initiative The STRIDES Initiative aims to help NIH and its institutes, centers, and offices (ICOs) accelerate biomedical research by reducing barriers in utilizing Read More...
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Supplemental Technology Award Review System (STARS) Overview STARS Request Form STARS System The Supplemental Technology Award Review System (STARS) is a web-based interface for submission and review of S&S supplement requests by CCR Read More...
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The OSTR offers cutting-edge technology platforms to the CCR scientific community through centralized facilities. The videos accessed through this page are designed to introduce the various scientific methodologies OSTR makes available through the cores on Read More...
Bethesda, MD
Core Facility
The CCR Genomics Core is located in Building 41 on the NIH Bethesda campus. The primary goal of the Core is to provide investigators from CCR/NCI and other NIH Institutes access to genomic technologies and Read More...
Rockville, MD
Trans NIH Facility
The Chemistry and Synthesis Center (CSC) of the National Heart, Lung, and Blood Institute (NHLBI) provides IRP scientists with targeted imaging probes and chemical tools that help accelerate cell-based assays, in vivo imaging studies, and Read More...
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Bioinformatics
Cancer research is a complex and data-intensive field. Cloud computing offers a powerful solution for researchers to store, analyze, and share large datasets efficiently. In this month’s topic spotlight, we will explore cloud resources Read More...
Web Page
Bioinformatics
This lesson provides an introduction to R in the context of single cell RNA-Seq analysis with Seurat. Learning Objectives Learn about options for analyzing your scRNA-Seq data. Learn about resources for learning R programming. Learn Read More...
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Bioinformatics
Learning Objectives To understand: 1. the difference between R and RStudioIDE. 2. how to work within the RStudio environment including: creating an Rproject and Rscript navigating between directories using functions obtaining help how R can enhance data Read More...
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Bioinformatics
Data visualization with ggplot2 Objectives To learn how to create publishable figures using the ggplot2 package in R. By the end of this lesson, learners should be able to create simple, pretty, and effective figures. Read More...
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Bioinformatics
NIDAP , the N IH I ntegrated D ata A nalysis P latform, is an innovative, cloud-based, and collaborative data aggregation and analysis platform. The platform Read More...
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Bioinformatics
Lesson 4: Submitting R Scripts via command line Learning Objectives Learn how to use R with less interaction Learn how to deploy sbatch R jobs, and learn about alternatives such as swarm . Learn about R job Read More...
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Bioinformatics
Multi-figure panel Objectives Combine multiple plots into a single figure Learn how to use patchwork and cowplot The primary purpose of this lesson is to learn how to combine multiple figures into a single multi-panel Read More...
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Bioinformatics
Objectives Combine multiple plots into a single figure Learn how to use aspects of cowplot and patchwork The primary purpose of this lesson is to learn how to combine multiple figures into a single multi-panel Read More...
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Bioinformatics
Introduction to R and RStudio IDE Objectives To understand: 1. the difference between R and RStudioIDE. 2. how to work within the RStudio environment including: creating an Rproject and Rscript navigating between directories using functions obtaining help 3. Read More...
Web Page
Bioinformatics
Data visualization with ggplot2 Objectives To learn how to create publishable figures using the ggplot2 package in R. By the end of this lesson, learners should be able to create simple, pretty, and effective figures. Read More...
Web Page
Bioinformatics
05/22/2017 - Driven by the decreasing costs and increasing performance of next-generation sequencing (NGS) technologies, the amount of available genomic data has grown exponentially in recent years. While most of the analyses of these data is Read More...