NATIONAL CANCER INSTITUTE - CANCER.GOV

Search Results for: PB-FGF8b-line 3

Total Results Found: 115

Total Results Found: 115

NCI LASP Mouse Modeling & Cryopreservation (MMC)
Frederick, MD

Core Facility

Repositories

The Mouse Modeling Core assists NIH investigators by generating and preserving genetically-engineered mouse strains. Services include scientific consultation, gene-targeting in mouse embryonic stem cells, micro-injection of nucleic acids, proteins, or ES cells into mouse embryos, Read More...

NCI Cloud Resources
Rockville, MD

Collaborative

Repositories

The NCI Cloud Resources are components of the NCI Cancer Research Data Commons (CRDC) that bring data and computational power together to enable cancer research and discovery. These cloud-based platforms eliminate the need for researchers Read More...

B4B Lesson 3: Useful Unix

Web Page

Bioinformatics

02/04/2025 - This lesson is part of a course, B4B: Unix and Biowulf.    This course will focus on developing command line skills, getting started and working on Biowulf (the NIH HPC cluster), and downloading and Read More...

B4B Lesson 2: Navigating file systems with Unix

Web Page

Bioinformatics

01/30/2025 - This lesson is part of a course,  B4B: Unix and Biowulf.    This course will focus on developing command line skills, getting started and working on Biowulf (the NIH HPC cluster), and downloading and Read More...

R Introductory Series: Ways to run R

Web Page

Bioinformatics

command line interactively.\ command line using a script .\ interactively through an environment. This course will demonstrate the utility of the RStudio integrated development environment (IDE). ::: notes I am also a fan of the R extension Read More...

R Introductory Series: Ways to run R

Web Page

Bioinformatics

R can be used via command line interactively, command line using a script , or interactively through an environment. This course will demonstrate the utility of the RStudio integrated development environment (IDE).

Molecular Targets Database and Tools
Rockville, MD

Repositories

Trans NIH Facility

Thousands of molecular targets have been measured in the NCI panel of 60 human tumor cell lines. Measurements include protein levels, RNA measurements, mutation status, and enzyme activity levels. You can choose to search for a Read More...

CCR Protein Expression Laboratory (PEL)
Frederick, Maryland

Core Facility

The Protein Expression Laboratory produces proteins to help CCR investigators achieve their research goals with the lowest possible cost in the shortest time. PEL is operated by Leidos Biomedical Research Inc. on behalf of NCI Read More...

DCTD Tumor Repository
Frederick, MD

Repositories

Trans NIH Facility

The Developmental Therapeutics Program (DTP) within NCI's Division of Cancer Treatment and Diagnostics (DCTD), has maintained a low temperature repository of transplantable in vivo-derived tumors and in vitro-established tumor cell lines from various species. This Read More...

NIH HPC OnDemand

Web Page

Bioinformatics

Recently, the NIH HPC Team has provided on demand access to HPC resources via web browser through integration of Open OnDemand , an open source project supporting "nearly 400 HPC centers around the world" . This Read More...

B4B Lesson 5: Downloading data from the SRA

Web Page

Bioinformatics

02/11/2025 - This lesson is part of a course, B4B: Unix and Biowulf.    This course will focus on developing command line skills, getting started and working on Biowulf (the NIH HPC cluster), and downloading and Read More...

B4B Lesson 4: Working on Biowulf

Web Page

Bioinformatics

02/06/2025 - This lesson is part of a course, B4B: Unix and Biowulf.    This course will focus on developing command line skills, getting started and working on Biowulf (the NIH HPC cluster), and downloading and Read More...

B4B Lesson 1: What is Biowulf?

Web Page

Bioinformatics

01/28/2025 - This lesson is part of a course, B4B: Unix and Biowulf.    This course will focus on developing command line skills, getting started and working on Biowulf (the NIH HPC cluster), and downloading and Read More...

Unix for the Bioinformatics Beginners

Web Page

Bioinformatics

12/12/2024 - Knowledge of Unix command line is advantageous for scientists who are new to bioinformatics, as many tools are designed to run on Unix-like systems. High performance computing systems (e.g., NIH Biowulf) also require Read More...

Data Visualization in ggplot: Customizations

Web Page

Bioinformatics

09/19/2024 - This one hour and half online training builds on the topics covered in the Data Visualization in ggplot training. It provides an overview of options for working with dates, times, and options for customizing Read More...

Introduction to R: Part 2 – Data Visualization

Web Page

Bioinformatics

09/06/2024 - This course provides an introduction to data visualization using R. Participants will learn data visualization with base R and using the R package ggplot2 to explore various types of data visualizations, including scatter plots, Read More...

Unix for the Bioinformatics Beginners

Web Page

Bioinformatics

07/24/2024 - Knowledge of Unix command line is advantageous for scientists who are new to bioinformatics, as many tools are designed to run on Unix-like systems. High performance computing systems (e.g., NIH Biowulf) also require Read More...

Data Visualization in ggplot: Customizations

Web Page

Bioinformatics

05/29/2024 - This class provides an overview of options for customizing a ggplot graph. This class will focus on methods for creating small multiples, options for customizing a graph, and how to apply ggplot themes.& Read More...

R Introductory Series: Geom functions

Web Page

Bioinformatics

A geom is the geometrical object that a plot uses to represent data. People often describe plots by the type of geom that the plot uses. --- R4DS There are multiple geom functions that Read More...

R Introductory Series: R base graphics

Web Page

Bioinformatics

You do not need to load a package to visually explore data. Rather, you can use base R graphics for plotting (from the graphics package). This plotting is fairly different from ggplot2 , which is based Read More...

R Introductory Series: What is Quarto?

Web Page

Bioinformatics

Quarto® is an open-source scientific and technical publishing system built on Pandoc --- https://quarto.org/ What does this mean? Quarto allows you to combine code, commentary, and other features to tell a story about Read More...

R Introductory Series: Why use Quarto

Web Page

Bioinformatics

Quarto helps you tell others exactly what you did and how you derived your conclusions - code, results, and conclusions wrapped up in a single document. Advantages of Quarto compared with other publishing systems: Can Read More...

Data Visualization in ggplot: Customizations

Web Page

Bioinformatics

02/13/2024 - This class provides an overview of options for customizing a ggplot graph. This class will focus on methods for creating small multiples, options for customizing a graph, and how to apply ggplot themes.& Read More...

Data Wrangling with R: Geom functions

Web Page

Bioinformatics

A geom is the geometrical object that a plot uses to represent data. People often describe plots by the type of geom that the plot uses. --- R4DS There are multiple geom functions that Read More...

Data Wrangling with R: Putting it all together

Web Page

Bioinformatics

Load in the comma separated file "./data/countB.csv" and save to an object named gcounts . {{Sdet}} Solution } gcounts `...1` colnames ( gcounts )[ 1 ] ## 1 Tspan6 703 567 867 71 970 242 ## 2 TNMD 490 482 18 342 935 469 ## 3 DPM1 921 797 622 661 8 500 ## 4 SCYL3 335 216 222 774 979 793 ## 5 FGR 574 574 515 584 941 344 ## 6 CFH 577 792 672 104 192 936 ## 7 FUCA2 798 766 995 27 756 546 ## 8 GCLC 822 874 923 705 667 522 ## 9 NFYA 622 793 918 868 334 64 {{Edet}} Plot the Read More...

Data Visualization in ggplot: Customizations

Web Page

Bioinformatics

11/15/2023 - This class provides an overview of options for customizing a ggplot graph. This class will focus on methods for creating small multiples, options for customizing a graph, and how to apply ggplot themes.& Read More...

Center for Advanced Tissue Imaging (CAT-I)

Web Page

The Center for Advanced Tissue Imaging (CAT-I) is an NIAID and NCI supported effort involving collaborative studies between experts in the Laboratory of Immune System Biology, DIR, NIAID and investigators in the DIR, NIAID and Read More...

NCI Genomic Data Commons (GDC)
Bethesda, MD

Repositories

Trans NIH Facility

The NCI Genomic Data Commons (GDC) was established by the NCI Center for Cancer Genomics (CCG) to support the receipt, harmonization, distribution, and analysis of genomic and clinical data from cancer research programs. The GDC Read More...

NCI Genomics and Pharmacology Facility
Bethesda, MD

Core Facility

The Genomics and Pharmacology Facility is part of the NCI's Center for Cancer Research (CCR), within the Developmental Therapeutics Branch. Its mission is to manage and assess molecular interaction data obtained through multiple platforms, increase Read More...

Mass Spectrometry for Proteins

Web Page

Mass Spectrometry Section of the Collaborative Protein Technology Resource (Bldg. 37) Core Capabilities: Identification of proteins in complexes, organelles, subcellular fractions, or fluids. Global relative protein quantitation. Quantitation by isotopic labeling of cells in culture (SILAC) Read More...

NCI Genetics Branch: OMICS Technology Facility
Bethesda, MD

Collaborative

Our operational objectives are to provide state-of-the-art OMICS technologies in support of the Genetics Branch (GB) investigators and collaborators. Research Services Wet Lab Single cell isolation from fresh, frozen, and FFPE tissue, DNA/RNA extractions Read More...

NCI LASP Animal Research Technology Support (ARTS)
Frederick, MD

Core Facility

NCI LASP Animal Research Technology Support (ARTS) provides customized technical support for basic and translational animal-based research to the scientific community. We offer a wide array of services ranging from expert colony management to the Read More...

NCI Molecular Cytogenetics Core Facility
Frederick, MD

Core Facility

Molecular Cytogenetics Core Facility facilitates the assessment of structural and numerical genomic changes in pre-cancer and cancer research models. This core provides comprehensive support for the cytogenetic analysis of cells from human and research animal Read More...

NCI LASP Gnotobiotics Facility (GF)
Frederick, MD

Core Facility

The Laboratory Animal Sciences Program (LASP) of the Frederick National Laboratory operates a Gnotobiotics Facility (GF) to support research focused on the role of microbiota in cancer inflammation, pathogenesis, and treatment response. The GF can Read More...

Technology Video Library

Web Page

The OSTR offers cutting-edge technology platforms to the CCR scientific community through centralized facilities. The videos accessed through this page are designed to introduce the various scientific methodologies OSTR makes available through the cores on Read More...

CCR Sequencing Facility
Frederick, MD

Core Facility

The introduction of DNA sequencing instruments capable of producing millions of DNA sequence reads in a single run has profoundly altered the landscape of genetics and cancer biology. Complex questions can now be answered at Read More...

Class Documents

Web Page

Bioinformatics

Most BTEP courses include detailed course materials including lesson content, additional resources, and lesson associated data. These course materials are listed here so that learners can easily return to and review concepts taught in class Read More...

BTEP Video Archive of Past Classes

Web Page

Bioinformatics

Listed below are the video recordings of past BTEP events (classes, seminars, workshops). Videos are hosted on various servers and may play slightly differently. Some videos may be downloaded for local viewing. Recorded Videos of Read More...

Introducing Bioinformatics for Beginners

Web Page

Bioinformatics

What is bioinformatics? Bioinformatics integrates biology, statistics, and computer science to develop and apply theory, methods, and tools for the collection, storage, and analysis of biological and related data. Bioinformatics plays a critical role in Read More...

Getting Started with Partek Flow at NIH

Web Page

Bioinformatics

07/24/2024 - Partek Flow enables scientists to construct analysis workflows for multi-omics sequencing data including DNA, bulk and single cell RNA, spatial transcriptomics, ATAC and ChIP. It is hosted on Biowulf, the NIH high performance computing Read More...

Partek Flow Quick Start Guide

Web Page

Bioinformatics

Partek Flow enables scientists to build comprehensive workflows for analyzing multi-omics high throughput sequencing data including DNA and variant calling, bulk and single cell modalities for RNA, ChIP, and ATAC, spatial transcriptomics, CITE, and immune Read More...

BTEP course: Course Overview

Web Page

Bioinformatics

Partek Flow is a start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with analyzing sequencing Read More...

BTEP course: Course overview

Web Page

Bioinformatics

Course Overview Partek Flow is a start-to-finish solution for analyzing high dimensional multi-omics sequencing data. It is a point-and-click software and is suitable for those who wish to avoid the steep learning curve associated with Read More...

R Introductory Series: Using the Pipe

Web Page

Bioinformatics

Let's explore how piping streamlines this. Piping (using |> ) allows you to employ multiple functions consecutively, while improving readability. The output of one function is passed directly to another without storing the intermediate steps Read More...

R Introductory Series: Using the Pipe

Web Page

Bioinformatics

Let's explore how piping streamlines this. Piping (using |> ) allows you to employ multiple functions consecutively, while improving readability. The output of one function is passed directly to another without storing the intermediate steps Read More...

R Introductory Series: Exercises: Lesson 2 Tidyverse

Web Page

Bioinformatics

Lesson 2 Exercise Questions: Part 2 (Tidyverse) The filtlowabund_scaledcounts_airways.txt includes normalized and non-normalized transcript count data from an RNAseq experiment. You can read more about the experiment here . You can obtain the data outside Read More...

R Introductory Series: The ggplot2 template

Web Page

Bioinformatics

The following represents the basic ggplot2 template: ggplot(data = ) + (mapping = aes()) We need three basic components to create a plot: the data we want to plot , geom function(s) , and mapping aesthetics . Notice the + symbol Read More...

R Introductory Series: Introduction to R and RStudio

Web Page

Bioinformatics

Learning Objectives To understand: 1. the difference between R and RStudioIDE. 2. how to work within the RStudio environment including: creating an Rproject and Rscript navigating between directories using functions obtaining help how R can enhance data Read More...

Learning R with BTEP

Web Page

Bioinformatics

R is both a computational language and open-source environment for statistical computing and graphics. While R programming was ranked 20 th in popularity when compared with other programming languages in December 2023, it remains a favorite among Read More...

Microbiome Analysis with QIIME2: QIIME2 Introduction

Web Page

Bioinformatics

Lesson 1: Toward fully reproducible microbiome multi-omics bioinformatics with QIIME 2 Lesson 1 does not include a hands on component, but rather includes an introduction to QIIME2 by guest speaker, Dr. Greg Caporaso, a leading developer of the Read More...

Data Wrangling with R: The ggplot2 template

Web Page

Bioinformatics

The following represents the basic ggplot2 template. ggplot(data = ) + (mapping = aes()) The only required components to begin plotting are the data we want to plot, geom function(s), and mapping aesthetics. Notice the + symbol following Read More...

Data Wrangling with R: DNAnexus Basics

Web Page

Bioinformatics

DNAnexus Basics Setting up the R-Studio environment outside of Class hours These instructions should be followed if you are setting up the R-Studio Web environment outside the normal class hours. Log into DNAnexus Each student Read More...

Microbiome Analysis with QIIME2: Metadata and importing

Web Page

Bioinformatics

Lesson 2: Getting Started with QIIME2 Lesson Objectives Obtain sequence data and sample metadata Import data and metadata Discuss other useful QIIME2 features including view QIIME2, provenance tracking, and the QIIME2 forum. DNAnexus DNAnexus provides a Read More...

Microbiome Analysis with QIIME2: Course Wrap-Up

Web Page

Bioinformatics

Lesson 7: Course Wrap-Up Learning Objectives Introduce the QIIME2 microbiome workflow for Biowulf Review key concepts Showcase additional plugins QIIME 2 on Biowulf As mentioned previously, QIIME 2 is installed on Biowulf. To see available versions use module Read More...