Bethesda, MD
Trans NIH Facility
The Clinical Image Processing Service (CIPS) offers timely and accurate advanced image processing of diagnostic radiology images for clinical care, research, and training. CIPS’ functions include clinical services and scientific researches. Established Technologies CIPS can Read More...
Bethesda, MD
Trans NIH Facility
Radiology and Imaging Sciences provides imaging services for National Institutes of Health (NIH) Clinical Center patients participating in research protocols conducted by the various NIH institutes. Services include X-rays, fluoroscopy, ultrasound, magnetic resonance imaging (MRI) Read More...
Frederick, MD
Core Facility
The function of the SAIP is to collaborate with NCI investigators in the development of mouse models, new molecular imaging probes for early detection and therapy, monitor tumors in vivo, and perform drug efficacy studies Read More...
Bethesda, MD
Trans NIH Facility
The Mouse Imaging Facility (MIF) is a shared, trans-NIH intramural resource for animal imaging studies. MIF provides access to state-of-the-art radiological imaging methods optimized for mice, rats, other animals, and tissue samples. MIF provides intellectual, Read More...
Bethesda, MD
Trans NIH Facility
The PET Department, CC, functions as a core facility that supports basic, translational, and clinical research using PET. It is a vertically integrated facility, with resources to produce positron-emitting radionuclides, manufacture PET radiopharmaceuticals in a Read More...
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The Center for Advanced Tissue Imaging (CAT-I) is an NIAID and NCI supported effort involving collaborative studies between experts in the Laboratory of Immune System Biology, DIR, NIAID and investigators in the DIR, NIAID and Read More...
Bethesda, MD
Trans NIH Facility
MAB provides visual communication solutions across all media to the entire NIH community. Our Medical Illustration section provides a complete range of biomedical visualization services, including manuscript/textbook figures, infographics, 3D modeling, animation, technical diagrams, Read More...
Bethesda, MD
Trans NIH Facility
The NIH Library is a biomedical research library, whose collection and services are available at no cost to NIH staff: Electronic Resources: Over 20,000 electronic journals, 190,000 eBooks, and 50 databases. , Training classes covering topics such as data Read More...
Frederick, MD
Collaborative
CCR VOLUME Electron Microscopy Core (CVEMC), formerly known as volume Electron Microscopy (vEM), aims to develop new techniques in volume electron microscopy (vEM) and, in collaboration with CCR Investigators, apply these techniques to research cell Read More...
Frederick, MD
Repositories
TCIA is a service which de-identifies and publishes medical images of cancer for download. New data proposals are reviewed by an Advisory Group on a quarterly basis. The data are organized as “collections”; typically, patients’ Read More...
Bethesda, MD
Core Facility
The NHLBI Murine Phenotyping Core carries out physiologic and behavioral testing in a diversity of mouse models for NHLBI and other NIH institutes.Established TechnologiesCardiovascular Phenotyping, Metabolic Phenotyping, Pulmonary Phenotyping, Behavioral Phenotyping, Exercise Physiology, Echocardiography, Read More...
Bethesda, MD
Core Facility
The core provides access to several different state-of-the-art 3D microscopes as well as computers to visualize and process image data. The facility houses equipment for 2D or 3D imaging of fixed and living specimens. High Read More...
Frederick, MD
Core Facility
The Optical Microscopy Analysis Core (OMAC), formerly known as the Optical Microscopy Analysis Lab (OMAL), focuses its research and development activities to quantitatively understand the molecular basis of three-dimensional (3D) cell organization, motility, invasion, and Read More...
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CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Extramural Common Fund Resources Metabolomics Workbench Developed by the NIH Metabolomics Common Fund's National Metabolomics Data Repository ( Read More...
Bethesda, MD
Core Facility
The LCBG Microscopy Core offers imaging technologies and training. The Core has established instrumentation for for 2D and 3D imaging of both fixed and living specimens.
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CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New NIH Resource Resources Advance your research with the NIH Mouse Imaging Facility (MIF) The NIH Mouse Imaging Read More...
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CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Intramural CryoEM (NICE) Consortium NICE provides NCI, NIAID, NIEHS, NICHD, NIDCR, NEI, and NIA investigators with Read More...
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CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New Resources on CREx Interested in imaging large scale biological samples? Volume electron microscopy allows for Read More...
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CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Cores on CREx NIBIB BEPS Micro Analytical Immunochemistry Unit The Micro Analytical Immunochemistry Unit employs a variety Read More...
Bethesda, MD
Trans NIH Facility
NIH Intramural CryoEM Consortium (NICE) serves intramural investigators in all NIH IC’s. NICE provides access to state-of-the-art Titan Krios cryo-electron microscopes for atomic-resolution structure determination of protein, macromolecular complexes, membrane receptors, cellular organelles, and Read More...
Frederick, MD
Core Facility
The Advanced Biomedical Computational Sciences (ABCS) group provides technology development, scientific consultation, collaboration and training, research, software development, and high-performance computing support. ABCS encompasses specialized groups focusing on machine learning applied to the interpretation of 2 Read More...
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October 6, 2022 crex.nih.gov CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Science & Technology Seminars and Training Events Upcoming Seminars and Educational Opportunities The following Read More...
Bethesda, MD
Collaborative
The NCI High-Throughput Imaging Facility (HiTIF) works in a collaborative fashion with NCI/NIH Investigators by providing them with the necessary expertise, instrumentation, and software to develop and execute advanced High-Throughput Imaging (HTI) assays. These Read More...
Bethesda, MD
Core Facility
LCMB Microscopy Core offers live cell imaging technologies as well as super-resolution, fluorescence lifetime and confocal imaging systems for immunofluorescence. Our confocal instruments are a Leica SP8 laser scanning confocal microscope and a Nikon spinning Read More...
Bethesda, MD
Trans NIH Facility
The Biomedical Engineering and Physical Science (BEPS) shared resource supports NIH’s intramural basic and clinical scientists on applications of engineering, physics, imaging, measurement, and analysis. BEPS is centrally located on the main NIH campus Read More...
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CREx News & Updates July 2022 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Click below to learn how easy it is to navigate the CREx platform. These short videos will Read More...
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Services: Biophysics Facility offers CD as an open-access instrument. First-time users must complete a short training session before gaining access to the instrument reservation calendar. Location: Building 50, room 3123 Description: CD spectroscopy measures the difference Read More...
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Back Services: Biophysics Facility offers CD as an open-access instrument. First-time users must complete a short training session before gaining access to the instrument reservation calendar. Location: Building 50, room 3123 Description: CD spectroscopy measures the Read More...
Bethesda, MD
Collaborative
Our operational objectives are to provide state-of-the-art OMICS technologies in support of the Genetics Branch (GB) investigators and collaborators. Research Services Wet Lab Single cell isolation from fresh, frozen, and FFPE tissue, DNA/RNA extractions Read More...
Web Page
Home About the Biophysics Core Biophysics Core Services [tabby title="Instrumentation"] NHLBI Biophysics Core The Biophysics Core Facility: Overview Core Facilities provide scientific resources, cutting-edge technologies and novel approaches to support DIR scientists. Availability of Read More...
Bethesda, MD
Trans NIH Facility
The facilities at AIM are available for use by the entire NIH intramural research community. While we welcome users with any size imaging project, AIM specializes in large, yearlong (or longer), collaborative research efforts with Read More...
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[tabby title="Home"] About NICE-NIH Intramural CryoEM Consortium NIH Intramural CryoEM Consortium (NICE) serves intramural investigators in all NIH IC’s. NICE provides access to state-of-the-art Titan Krios cryo-electron microscopes for atomic-resolution structure determination of Read More...
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The OSTR offers cutting-edge technology platforms to the CCR scientific community through centralized facilities. The videos accessed through this page are designed to introduce the various scientific methodologies OSTR makes available through the cores on Read More...
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Bioinformatics
05/29/2025 - Prostate cancer exhibits significant intratumoral heterogeneity, driving a spectrum of phenotypes ranging from indolent disease to aggressive metastasis, challenging risk stratification and treatment. A key feature of this heterogeneity is clonal diversity, encompassing both Read More...
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Bioinformatics
04/09/2025 - Dr. Aristotelis Tsirigos will present a seminar titled "Investigating the role of 3D chromatin in gene regulation using data integration and machine learning" for the LRBGE Seminar Series.
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Bioinformatics
12/10/2019 - Please bring a laptop. If you need to borrow a laptop please contact ncibtep@nih.gov No software installation is needed as this program will run on a web browser. iCn3D provides a Read More...
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Bioinformatics
02/03/2025 - AI Club is a weekly meeting that explores various topics relating to AI and deep learning in biomedical sciences, typically in a seminar, workshop, or journal club format. AI Club is intended to be Read More...
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Bioinformatics
04/15/2021 - Presenter: Ichiro Hiratani, Ph.D. Team Leader Laboratory for Developmental Epigenetics RIKEN Center for Biosystems Dynamics Research (RIKEN BDR), Japan JOIN WEBEX MEETING https://cbiit.webex.com/cbiit/j.php?MTID=m13d114a534 Read More...
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Bioinformatics
03/20/2025 - Please note: Registration is required to get the Meeting Link for this event. Please pre-register. BTEP and the Single Cell and Spatial Transcriptomics Interest Group jointly present: Quantifying spatiotemporal dynamics during embryogenesis is crucial Read More...
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Bioinformatics
06/07/2023 - " New Violin plot, more statistical tests, and even more info for 3D PCA in Qlucore 3.9 " We are excited to share the new Qlucore Omics Explorer version 3.9 with you! It brings to you Read More...
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Bioinformatics
10/22/2024 - Popular structure prediction program AlphaFold3 and its competitor Chai-1 recently added capabilities to predict 3D RNA structures straight from sequence input. In this talk, we will discuss some test cases for these programs and Read More...
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Bioinformatics
05/21/2020 - Students will learn how to identify cell populations and detect differentially expressed genes in a simple Single Cell RNA-Seq experiment with the point-and-click interface in Partek Flow. For example: import data; filter cells using Read More...
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Bioinformatics
Passkey locations: Chrome: chrome://settings/passkeys (can edit or delete if necessary) See https://docs.github.com/en/authentication/authenticating-with-a-passkey/managing-your-passkeys to learn about managing GitHub passkeys. GitHub SSH keys: See table for comparison. Algorithm Read More...
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Bioinformatics
11/01/2023 - Analysis of medical images such as MRI, CT, X-ray and ultrasound requires a comprehensive environment for data access, visualization, processing, and algorithm development. MATLAB provides tools such as Medical Imaging Toolbox and Deep Learning Read More...
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Bioinformatics
11/02/2022 - Do you need to strengthen your structural biology skills? The NIAID Bioinformatics and Computational Biosciences Branch (BCBB) is offering training sessions over the next few weeks. Current topics include three series of practical training Read More...
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Bioinformatics
03/18/2021 - Recording Link CD8 T cell dysfunction is observed in diverse settings of chronic antigen exposure, including in cancer and chronic viral infection. We carried out a unified analysis of over 300 ATAC-seq and RNA-seq experiments Read More...
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Bioinformatics
10/23/2019 - Please note class will start at 1:30 PM and end at 3:30 PM. Hands On Training on Single Cell RNA-Seq Data Analysis in Partek Flow Please bring your own computer for this hands-on training. If you Read More...
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Bioinformatics
08/28/2019 - Here is the handout used for todays Single Cell RNA Seq analysis class: PartekFlowSingleCellRNA-SeqTrainingHandout_August2019 Attention: This class is limited to 28 people due to the size of the room. There is another Single Cell Read More...
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Bioinformatics
09/19/2018 - TOPIC: Single Cell RNA-Seq Data Analysis in Partek Flow Partek (partek.com) Flow software provides a point-and-click interface for analysis of next -gen sequencing data. Users can customize analysis pathways for sequence alignment, differential Read More...
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Bioinformatics
The Lasergene Protein package includes Protean 3D (+1 prediction per Nova Application) and DNASTAR Navigator. The protein analysis and modeling workflow provides tools pertinent to antibody modeling, protein docking interaction prediction, epitome prediction, molecular motion visualization, Read More...
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Bioinformatics
09/09/2025 - https://researchfestival.nih.gov/2025-nih-research-festival Tuesday, September 09, 2025 Wednesday, September 10, 2025 Thursday, September 11, 2025 Friday, September 12, 2025 Tuesday, September 09, 2025 Poster Sessions throughout the day, FAES Terrace (9:00 a.m. - 5:00 p.m.) Morning Session, Bldg. 10, Lipsett Amphitheater (10:00 Read More...
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Bioinformatics
03/26/2025 - Developing artificial intelligence (AI) schemes to assist the clinician towards enabling precision medicine approaches requires development of objective markers that are predictive of disease response to treatment or prognostic of longer-term patient survival. The Read More...
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Bioinformatics
01/14/2025 - Join leaders from NCI’s Human Tumor Atlas Network (HTAN) to hear about the program’s collaborative efforts to develop comprehensive atlases incorporating cellular, molecular, and histological dimensions across various cancer types and stages. Read More...
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Bioinformatics
06/25/2024 - Register for the June Emerging Technologies Seminar to hear from Dr. Dana Pe’er of the Memorial Sloan Kettering Cancer Center. She will describe new bioinformatics tools for exploring the complex tumor Read More...
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Bioinformatics
05/15/2024 - In this one-hour webinar, you'll get a demonstration of DNASTAR Lasergene Software. DNASTAR offers software solutions for molecular biology, protein analysis, and genomics. This presentation will focus on an overview of the applications Read More...
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Bioinformatics
02/21/2024 - Dear colleagues, The Bioinformatics and Computational Biosciences Branch (BCBB) at NIAID invites you to join us for in-person hands-on workshops that will explore biovisualization techniques. Developers of UCSF ChimeraX and Cytoscape will be on Read More...
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Bioinformatics
06/16/2022 - Sarah Teichmann is co-founder and principal leader of the Human Cell Atlas (HCA) international consortium. The International Human Cell Atlas initiative aims to create comprehensive reference maps of all human cells to further understand Read More...
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Bioinformatics
02/28/2022 - DNASTAR offers software solutions for molecular biology, protein analysis, and genomics. In this one hour webinar attendees will be presented with an overview of the applications included in Lasergene Molecular Biology and Protein. The Read More...
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Bioinformatics
02/23/2022 - We will go over data clean up, visualization, clustering (tSNE, UMAP, 3D PCA) and cluster identification using your markers. Qlucore supports automatic import of 10x data, user-friendly visualization, easier cluster ID and visual statistics. Read More...
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Bioinformatics
02/23/2021 - Register Description DNASTAR offers software solutions for molecular biology, protein analysis, and genomics. In this one hour webinar attendees will be presented with an overview of the applications included in Lasergene Molecular Biology and Read More...
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Bioinformatics
04/23/2020 - The Center for Biomedical Informatics and Information Technology (CBIIT) training program invites you to attend a webinar on the software application, DNASTAR Lasergene. DNASTAR offers data analysis tools for molecular biology, protein analysis, and Read More...
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Bioinformatics
Import data from the sheet "iris_data_long" from the excel workbook (file_path = "./data/iris_data.xlsx"). Make sure the column names are unique and do not contain spaces. Save Read More...
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Bioinformatics
First, we perform the ordination. qiime diversity umap \ --i-distance-matrix diversity-core-metrics-phylogenetic/unweighted_unifrac_distance_matrix.qza \ --o-umap uu-umap.qza qiime diversity umap \ --i-distance-matrix diversity-core-metrics-phylogenetic/weighted_unifrac_distance_matrix.qza \ --o-umap wu-umap.qza Then we use emperor Read More...
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Bioinformatics
Bolyen E, Rideout JR, Dillon MR, Bokulich NA, Abnet CC, Al-Ghalith GA, Alexander H, Alm EJ, Arumugam M, Asnicar F, Bai Y, Bisanz JE, Bittinger K, Brejnrod A, Brislawn CJ, Brown CT, Callahan BJ, Caraballo-Rodrí Read More...
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Bioinformatics
References This course series primarily used information from QIIME2.org and the QIIME2 forum . Specifically, this course series focused on data and code from the QIIME2 Cancer Microbiome Intervention Tutorial . Special thanks goes to the Read More...
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Bioinformatics
06/16/2022 - Sarah Teichmann, Ph.D., Fellow of the Academy of Medical Sciences (UK FMedSci), Fellow of the Royal Society (FRS), Wellcome Sanger Institute Sarah Teichmann is co-founder and principal leader of the Human Cell Atlas ( Read More...
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Bioinformatics
02/20/2020 - Learn how to easily analyze your gene expression data yourself - using Qlucore Omics Explorer NCI/CCR:To get access to Qlucore, put a request into NCI at Your Service under Get Help https:// Read More...
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Bioinformatics
09/26/2019 - Qlucore Omics Explorer is an interactive analysis and visualization tool that helps the user to find groups, structures, variable networks and discriminating variables. You can use your own data and analyze public data. Omics Read More...
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Bioinformatics
05/22/2017 - Driven by the decreasing costs and increasing performance of next-generation sequencing (NGS) technologies, the amount of available genomic data has grown exponentially in recent years. While most of the analyses of these data is Read More...
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Bioinformatics
03/18/2015 - This workshop will cover basics of exome-seq analysis including downstream interpretation of variants using a variety of open-source and commercial webtools (Golden Helix, IGV, Ingenuity Variant Analysis, GeneGrid (Genomatix), MuPit/Cravat). Day 1 - AM (9:30 Read More...
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Bioinformatics
The data used in this practice exercise can be found here. Q1. Import data from the sheet "iris_data_long" from the excel workbook (file_path = "./data/iris_data.xlsx"). Make Read More...
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Bioinformatics
Principal Components Analysis (PCA) transforms high dimensional data such as those derived from RNA sequencing so that researchers can see how study variables cluster together. The result of PCA is that the original data is Read More...
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Bioinformatics
Geneious Prime is a graphical user interface (GUI) based bioinformatics package that contains a suite of tools for molecular biology and Next Generation Sequencing analysis. {{Sdet}}{{Ssum}}Listing of Analysis Functions{{Esum}} Classic Computational Molecular Read More...
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Bioinformatics
Python is a programming language used in many different applications including data science. It is a high-level computer language, as the syntax is easily read and understood. Python is considered a beginner-friendly language. Python also Read More...
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Bioinformatics
The computational chemistry and protein modeling team in the Advanced Biomedical Computational Science (ABCS) group provides novel solutions in structural modeling and computational chemistry. Computational scientists in the group collaborate with NCI researchers by using Read More...
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Bioinformatics
Help Session Lesson 3 Loading data Import data from the sheet "iris_data_long" from the excel workbook (file_path = "./data/iris_data.xlsx"). Make sure the column names are unique and Read More...
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Bioinformatics
Lesson 6 . Learning Objectives Introduce several beta diversity metrics Discover different ordination methods Learn about statistical methods that are applicable Beta diversity Beta diversity is between sample diversity. This is useful for answering the question, how Read More...
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Bioinformatics
This page uses content directly from the Biostar Handbook by Istvan Albert. Learning objectives: 1. Understand what a sequence alignment is and how different algorithms can effect alignments. 2. Learn how scoring matrices and gap penalties (gap Read More...
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Bioinformatics
03/08/2016 - BTEP Workshop on Exome-Seq Data Analysis and Variant Annotation (2-day) This workshop will cover the basics and best practices of exome-seq analysis including downstream interpretation of variants using a variety of in-house, open-source and Read More...