Web Page
Bioinformatics
02/07/2023 - The National Cancer Institute (NCI) is holding a virtual meeting on February 7-8, 2023 from 12 - 4 PM ET, Variation to Biology: Optimizing Functional Analysis of Cancer Risk Variants , to identify and discuss how best to Read More...
Web Page
Bioinformatics
Chart Report is an annotation term focused view which lists annotation terms and their associated genes under study. -- DAVID help documents Clicking on the Functional Annotation Chart button, we are taken to the page Read More...
Web Page
Bioinformatics
03/27/2024 - DAVID (the Database for Annotation, Visualization and Integrated Discovery) provides a comprehensive set of functional annotation tools for investigators to understand the biological meaning behind large lists of genes acquired from high-throughput assays such Read More...
Web Page
Bioinformatics
Functional annotation clustering works to cluster annotations that share similar genes. If we click on Functional Annotation Clustering in the Annotation Summary Results page then we can see the functional annotation clusters that our input Read More...
Rockville, MD
Core Facility
Trans NIH Facility
The Functional Genomics Laboratory (formerly, the RNAi Screening Facility) of the National Center for Advancing Translational Sciences (NCATS) assist investigators with all stages of project planning and execution, beginning with assay development through genome-wide siRNA Read More...
Web Page
Bioinformatics
06/11/2025 - All Biowulf u er , and all tho e intere ted in u ing the y tem , are invited to call in to our Virtual Walk-in Con ult to di cu problem and concern , from Read More...
Web Page
Bioinformatics
04/16/2025 - Please email staff@hpc.nih.gov for the meeting link. All Biowulf users, and all those interested in using the systems, are invited to call in to our Virtual Walk-in Consult to discuss problems Read More...
Web Page
Bioinformatics
04/03/2025 - DAVID (the Database for Annotation, Visualization and Integrated Discovery) provides a comprehensive set of functional annotation tools for investigators to understand the biological meaning behind large lists of genes acquired from high-throughput assays such Read More...
Web Page
Bioinformatics
02/21/2024 - Dear colleagues, The Bioinformatics and Computational Biosciences Branch (BCBB) at NIAID invites you to join us for in-person hands-on workshops that will explore biovisualization techniques. Developers of UCSF ChimeraX and Cytoscape will be on Read More...
Web Page
Bioinformatics
Using the Gene Functional Classifier to group genes with similar annotations, how many clusters do we get? {{Sdet}} Solution{{Esum}} {{Edet}}
Web Page
Bioinformatics
Once you have intiated your document, you can get started documenting your analysis. There are three basic components to a quarto document: yaml header (bracketed by --- ) The yaml header or file allows us to Read More...
Web Page
Bioinformatics
09/13/2023 - FORGEdb is a web-based tool that can rapidly integrate data for individual genetic variants, providing information on associated regulatory elements, transcription factor (TF) binding sites and target genes for over 37 million variants. Read More...
Web Page
Bioinformatics
Using ls as an example, we can get an idea of the overall structure of a unix command. Image inspired by "Learn Enough Command Line to Be Dangerous" The first thing we see Read More...
Web Page
Bioinformatics
Provides a gene-centric view which lists the genes and their associated annotation terms... -- DAVID help documents See https://www.ncbi.nlm.nih.gov/pmc/articles/PMC4717906/ for difference between pathway and network analysis DAVID Read More...
Web Page
Vinutha Balachandra, Ph.D., Visiting Fellow, Yeast Genome Stability Section, Genetics Branch, Center for Cancer Research, NCI. Presentation Title: Genome-wide screening identifies role for histone H3 chaperones in preventing mis-localization of CENP-A for chromosomal stability Read More...
Web Page
Bioinformatics
03/29/2024 - This event is sponsored by an organization outside of the NIH; it is listed here due to the nature of the presented topics and their appeal to the NCI community. Description: Recent developments in Read More...
Web Page
Bioinformatics
03/06/2024 - The NCI Cancer Diagnosis Program in the Division of Cancer Treatment and Diagnosis is hosting a workshop, “Digital Pathology Imaging (DPI) in Cancer Clinical Trials and Research.” This workshop will Read More...
Web Page
Bioinformatics
06/25/2025 - Dr. Cleary will pre ent their late t work developing Perturb-FI H, a method that capture the effect of genetic change within and between cell while pre erving the patial architecture of living y Read More...
Web Page
Bioinformatics
04/01/2025 - Whether you are measuring mRNA expression, protein expression, DNA methylation, expressed miRNAs, protein binding to DNA or RNA, etc., you will likely end up with a list of genes or gene products from which Read More...
Web Page
Bioinformatics
Provides a gene-centric view which lists the genes and their associated annotation terms... -- DAVID help documents
Web Page
Bioinformatics
Chart Report is an annotation term focused view which lists annotation terms and their associated genes under study. -- DAVID help documents GO terms UniProt keywords (starts with UP_KW) sequence features (UP_SEQ_FEATURE) Read More...
Web Page
Bioinformatics
How many annotation clusters were generated using default parameters? {{Sdet}} Solution{{Esum}} 15 clusters were generated {{Edet}} Look thoroughly through the annotations, are any expected annotations and unexpected ones given that this is a tumor versus Read More...
Web Page
Bioinformatics
DAVID can also generate gene clusters where those gene that cluster together share common annotations. We can view the cluster information as a heatmap where green represents an association between the gene and an annotation. Read More...
Web Page
Bioinformatics
Includes ‘gene set scoring’ methods such as GSEA, which first compute DE scores for all genes measured, and subsequently compute gene set scores by aggregating the scores of contained genes. --- Geistlinger et al. 2021 GSEA Read More...
Web Page
Bioinformatics
This lesson will provide an overview of the Database for Annotation, Visualization and Integrated Discovery (DAVID) . We will Provide some background on DAVID, including what it does statistical methods that it uses some expected outputs Read More...
Web Page
Bioinformatics
Determine potential next steps following differential expression analysis. Tour geneontology.org and understand the three main ontologies. Learn about different methods and tools related to functional enrichment and pathway analysis. Get familiar with databases commonly Read More...
Web Page
Bioinformatics
05/28/2024 - NCI is launching the virtual Cancer AI Conversations series featuring multiple perspectives on timely topics and themes in artificial intelligence for cancer research! Each event features short talks from 2-4 subject matter Read More...
Web Page
Bioinformatics
03/26/2024 - NCI is launching the virtual Cancer AI Conversations series featuring multiple perspectives on timely topics and themes in artificial intelligence for cancer research! Each event features short talks from 2-4 subject matter Read More...
Web Page
Bioinformatics
01/23/2024 - NCI is launching the virtual Cancer AI Conversations series featuring multiple perspectives on timely topics and themes in artificial intelligence for cancer research! Each event features short talks from 2-4 subject matter Read More...
Web Page
Bioinformatics
R is generally thought of as a functional programming language, where the focus is on the functions rather than the object, and the output of the function is always the same given the same inputs. Read More...
Web Page
Bioinformatics
Functional enrichment and pathway analysis have broad and varying definitions. For our purposes, there are three general approaches: 1. Over-Representation Analysis (ORA), 2. Functional Class Scoring (FCS), and 3. Pathway Topology (PT) ( Khatri et al. 2012 ). Examining genes in Read More...
Web Page
Bioinformatics
"The goal of DAVID's design is to be able to efficiently upload and analyze a list consisting of
Web Page
Bioinformatics
"The goal of DAVID's design is to be able to efficiently upload and analyze a list consisting of
Web Page
Bioinformatics
Functional enrichment and comparison with R . ClusterProfiler, pathview, and good introductory information Article on the impact of the evolving GO Ten Years of Pathway Analysis: Current Approaches and Outstanding Challenges, PLOS Computation Biology, 2012 Pathway enrichment Read More...
Bethesda, MD
Trans NIH Facility
The Neurorehabilitation and Biomechanics Research Section (also referred to as the NAB LAB) is a multidisciplinary group of highly qualified scientists, clinical and technical staff, and trainees with diverse backgrounds including medical, physical therapy, neuroscience Read More...
Bethesda, MD
Trans NIH Facility
The Clinical Image Processing Service (CIPS) offers timely and accurate advanced image processing of diagnostic radiology images for clinical care, research, and training. CIPS’ functions include clinical services and scientific researches. Established Technologies: CIPS can Read More...
Web Page
Bioinformatics
06/18/2025 - Gene et enrichment analy i (G EA) i a popular tool for evaluating functional enrichment, e pecially following differential expre ion analy i . Thi e ion of the BTEP Coding Club will how attendee Read More...
Web Page
Bioinformatics
05/08/2025 - Attend this virtual seminar via Teams. The Division of Intramural Research (DIR) sponsors a monthly series of talks by intramural and special guest speakers celebrating genetics and genomics research. Speakers are selected by NHGRI Read More...
Web Page
Bioinformatics
05/01/2025 - In this talk, Dr. Stergachis will present data on using Fiber-seq and deaminase-assisted Fiber-seq (DAF-seq) to resolve the functional impact of both germline and somatic genetic variants, as well as to identify somatic epimutations Read More...
Web Page
Bioinformatics
12/12/2024 - Please join us on Thursday, December 12 at 9AM EST for a NCI CCR Liver Cancer Program (LCP) virtual seminar by Dr. Julien Calderaro entitled & Read More...
Web Page
Bioinformatics
11/26/2024 - Cancer AI Conversations is a virtual event series featuring timely topics related to the application of artificial intelligence in cancer research. Moderator: Jayashree Kalpathy-Cramer, Ph.D., University of Colorado Additional information can be found Read More...
Web Page
Bioinformatics
11/01/2024 - A hands-on workshop for analyzing metagenomes in the open-source microbiome application Nephele. Participants will first learn how to navigate Nephele and process their reads to trim and filter for quality. They will then learn Read More...
Web Page
Bioinformatics
07/23/2024 - Cancer AI Conversations are virtual events featuring timely topics related to the application of artificial intelligence (AI) in cancer research. This discussion will focus on the impact of AI on cancer health disparities.& Read More...
Web Page
Bioinformatics
05/23/2024 - During this virtual conversation of the Cancer Moonshot Seminar Series, Dr. Kai Tan, an investigator with the Human Tumor Atlas Network , and Liz Salmi, a co-investigator and patient advocate with the Participant Engagement and Read More...
Web Page
Bioinformatics
03/18/2024 - Electronic lab notebooks (ELNs) are digital tools that allow researchers to record, manage, and share their data and results in a secure and efficient way. The virtual roundtable discussion will cover various aspects of Read More...
Web Page
Bioinformatics
DEICODE compositional beta diversity with biplots performs a Robust Aitchison PCA q2-clawback can improve taxonomic classifications uses taxonomic weights based on environment q2-picrust2 functional prediction from 16S rRNA data q2-sidle a new Read More...
Web Page
Bioinformatics
Work through DNAnexus? Find a nice cancer data set for 16S and shotgun Divide into two workshops or courses? Course structure or workshop structure? Amplicon processing and analysis (5 week course) (4 weeks) 1. Talk by Greg Caparaso? 1. Read More...
Web Page
Bioinformatics
Microbiome Course Course Outline Work through DNAnexus? Find a nice cancer data set for 16S and shotgun Divide into two workshops or courses? Course structure or workshop structure? Amplicon processing and analysis (5 week course) (4 weeks) 1. Read More...
Web Page
Bioinformatics
In the previous class, we got an overview of functional and pathway analysis, which help to put RNA sequencing results into biological context. We were introduced to tools that could help us perform these analyses.
Web Page
Bioinformatics
Now, run the Functional Annotation Tool. Look at the gene wise view for DISGENET, are there any genes in our input that map to cancer? {{Sdet}} Solution{{Esum}} {{Edet}}
Web Page
Bioinformatics
Database for Annotation, Visualization and Integrated Discovery (DAVID) - practicing what we learned Learning objectives In this practice session, we will practice using DAVID. Practicing what we learned To help us apply what we learned Read More...
Web Page
Bioinformatics
In the previous class, we got an overview of functional and pathway analysis, which help to put RNA sequencing results into biological context by informing us of things like biomolecular pathway, biological function, cellular localization, Read More...
Web Page
Bioinformatics
Thus far we have: Downloaded raw RNA-Seq data (.fastq files). Examined raw data quality using fastqc and multiqc . Performed adapter and quality trimming using Trimmomatic . Aligned the raw sequences to a reference genome (human chromosome 22 Read More...
Web Page
Bioinformatics
To help us apply what we learned during the lesson, we are going to use DAVID to obtain some functional annotation information on upregulated genes in the HCC1395 dataset. Recall that the HCC1395 dataset is Read More...
Web Page
Bioinformatics
This tool was created and is maintained by the Laboratory of Human Retrovirology and Immunoinformatics at Frederick National Lab. DAVID is used for functional analysis. Given an input gene list, DAVID will inform us of Read More...
Web Page
Bioinformatics
This tool was created and is maintained by the Laboratory of Human Retrovirology and Immunoinformatics at Frederick National Lab. DAVID is used for functional analysis. Given an input gene list, DAVID will inform us of Read More...
Web Page
Bioinformatics
To use various tools for functional analysis, you will need a list of annotated genes. Gene annotations come in a variety of flavors and not all flavors are compatible with every tool. For example, Gene Read More...
Web Page
Bioinformatics
Lessons focus on gene ontology and pathway analysis. Lesson 17: Introduction to gene ontology and pathway analysis ( Recording ) Lesson 18: Functional enrichment with DAVID ( Recording ) Lesson 19: Pathway analysis with Qiagen IPA ( Recording ) Lesson 20: Review and Course Wrap-up ( Read More...
Web Page
CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New NIH Resource Resources Advance your research with the NIH Mouse Imaging Facility (MIF) The NIH Mouse Imaging Read More...
Web Page
CREx News & Updates August 2022 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Site Spotlight NCATS Functional Genomics Laboratory (FGL) FGL is designed to help NIH Investigators use the latest Read More...
Frederick, MD
Core Facility
The function of the SAIP is to collaborate with NCI investigators in the development of mouse models, new molecular imaging probes for early detection and therapy, monitor tumors in vivo, and perform drug efficacy studies Read More...
Bethesda, MD
Core Facility
The NHLBI Murine Phenotyping Core carries out physiologic and behavioral testing in a diversity of mouse models for NHLBI and other NIH institutes. Established Technologies: Cardiovascular Phenotyping, Metabolic Phenotyping, Pulmonary Phenotyping, Behavioral Phenotyping, Exercise Physiology, Read More...
Web Page
October 6, 2022 crex.nih.gov CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Science & Technology Seminars and Training Events Upcoming Seminars and Educational Opportunities The following Read More...
Bethesda, MD
Trans NIH Facility
The Mouse Imaging Facility (MIF) is a shared, trans-NIH intramural resource for animal imaging studies. MIF provides access to state-of-the-art radiological imaging methods optimized for mice, rats, other animals, and tissue samples. MIF provides intellectual, Read More...
Web Page
CREx News & Updates November 2021 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Site Spotlight FACILITY HIGLIGHTS Learn more about services from the NINDS Quantitative Magnetic Resonance Imaging Core. NINDS Read More...
Frederick, MD
Core Facility
The research conducted within the Synthetic Biologics Core (SBC) Facility has a dual role: Generate chemical biology tools and drug candidates for molecular targets identified by NCI research groups, Develop novel effective methods and tools Read More...
Bethesda, MD
Collaborative
The CCR Collaborative Bioinformatics Resource (CCBR) is a centrally funded resource group which provides a mechanism for CCR researchers to obtain many different types of bioinformatics assistance to further their research goals. The group has Read More...
Bethesda, MD
Collaborative
The NCI High-Throughput Imaging Facility (HiTIF) works in a collaborative fashion with NCI/NIH Investigators by providing them with the necessary expertise, instrumentation, and software to develop and execute advanced High-Throughput Imaging (HTI) assays. These Read More...
Web Page
CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New NIH Resource Resources Derive Greater Insights and Accelerate your Research Using Bioinformatic Tools! CREx is an NIH Read More...
Web Page
Bioinformatics
12/17/2014 - Day 1 - AM (9:30 AM – 12:30 PM) Ingenuity IPA - Basic Training ( Kate Wendelsdorf, Ph.D. - Ingenuity Pathway Analysis) Ingenuity IPA® is the industry leading software solution to model, analyze, and understand complex biological and Read More...
Web Page
Bioinformatics
06/11/2025 - This two-hour virtual roundtable discussion will cover development and implementation of artificial intelligence (AI) chatbots at NIH. A chatbot is a software application or web interface designed to have textual or spoken conversations and Read More...
Web Page
Bioinformatics
05/27/2025 - Agentic AI is a class of artificial intelligence that acts autonomously to make decisions and take actions to achieve specific goals. During this event, the participants will discuss the emerging role of AI agents Read More...
Web Page
Bioinformatics
04/17/2025 - Cardinal Bernardin Cancer Center Virtual Grand Rounds Interested in learning about various cancer indicators, approaches for data integration , and how to leverage data to drive scientific discovery? Then join NCI CBIIT’s Read More...
Web Page
Bioinformatics
03/13/2025 - UCSC Xena showcases seminal cancer genomics datasets from The Cancer Genome Atlas (TCGA) and the Pan-Cancer Atlas, as well as the Genomic Data Commons, Pan-cancer Atlas of Whole Genomes, and the International Cancer Genome Read More...
Web Page
Bioinformatics
01/10/2025 - NIH DIRECTORS SEMINAR SERIES In this presentation, Dr. Scholz will discuss the approach to tackling complex neurodegenerative diseases using modern genomic tools, focusing on Lewy body dementia, a major research area in her lab. Read More...
Web Page
Bioinformatics
01/07/2025 - You’re invited to the ChIRP Launch Event! On January 7, 2025, the Office of Intramural Research (OIR) and the Clinical Research Informatics Strategic Planning Initiative (CRISPI) are hosting the virtual Launch Event for Read More...
Web Page
Bioinformatics
11/12/2024 - Join us at the upcoming hybrid NIH BRAIN NeuroAI Workshop on November 12 and 13, with virtual access to in-person panels and discussions at the NIH Campus in Bethesda, MD. Artificial intelligence (AI) is reshaping technology Read More...
Web Page
Bioinformatics
11/06/2024 - Join Our Training on Spatial Omics Data Analysis with MAWA (Multiplex Analysis Web Apps). Want to learn how to process and analyze your spatial proteomics/transcriptomics data? Join us for four virtual hour-long sessions Read More...
Web Page
Bioinformatics
10/29/2024 - Join Our Training on Spatial Omics Data Analysis with MAWA (Multiplex Analysis Web Apps). Want to learn how to process and analyze your spatial proteomics/transcriptomics data? Join us for four virtual hour-long sessions Read More...
Web Page
Bioinformatics
10/22/2024 - Join Our Training on Spatial Omics Data Analysis with MAWA (Multiplex Analysis Web Apps). Want to learn how to process and analyze your spatial proteomics/transcriptomics data? Join us for four virtual hour-long sessions Read More...
Web Page
Bioinformatics
10/22/2024 - Popular structure prediction program AlphaFold3 and its competitor Chai-1 recently added capabilities to predict 3D RNA structures straight from sequence input. In this talk, we will discuss some test cases for these programs and Read More...
Web Page
Bioinformatics
10/15/2024 - Join Our Training on Spatial Omics Data Analysis with MAWA (Multiplex Analysis Web Apps). Want to learn how to process and analyze your spatial proteomics/transcriptomics data? Join us for four virtual hour-long sessions Read More...
Web Page
Bioinformatics
10/08/2024 - We will cover recently developed statistical approaches to the classification of BRCA2 variants using the functional-assay data generated by our NCI collaborators (Dr. Sharan’s lab). Our main objective is to illustrate how statistical Read More...
Web Page
Bioinformatics
09/23/2024 - Come to the Fair! In the morning session, several different groups will speak about their training and education programs. The afternoon session will be devoted to learning about research using AI across Read More...
Web Page
Bioinformatics
09/19/2024 - This hour and-half online training discusses how MATLAB enhances data analysis and visualization for technical professionals who typically use Excel. It highlights MATLAB's advantages, such as access to pre-built mathematical and analysis functions, Read More...
Web Page
Bioinformatics
09/13/2024 - Reverse-phase protein arrays (RPPAs) represent a powerful functional proteomic approach to elucidate cancer-related molecular mechanisms and develop novel cancer therapies. To facilitate community-based investigation of the large-scale protein expression data generated by Read More...
Web Page
Bioinformatics
09/12/2024 - Telomere to telomere (T2T) genome assemblies represent a paradigm shift in comparative genomics, offering insights into chromosome structure, evolution, and function at the highest resolution. Dr. O'Neill's lab has made recent Read More...
Web Page
Bioinformatics
06/06/2024 - The CCR Genomics Core Facility is pleased to host a virtual technology workshop with EpiCypher on CUT&RUN library prep/sequencing Presentation overview: The location of histone post-translational modifications and chromatin-associated proteins Read More...
Web Page
Bioinformatics
The NIH Library provides expert guidance on bioinformatics, biostatistics, data visualization, and data curation throughout the research process. Explore a variety of classes, on-demand trainings, resources, and services related to data science and bioinformatics available Read More...
Web Page
Bioinformatics
05/20/2024 - Hybrid (in-person location in Rockville, MD) Virtual attending via WebEx Meeting, link will be available two weeks prior to the meeting date . Attend the 2024 Co-Clinical Imaging Research Resource Program (CIRP) Read More...
Web Page
Bioinformatics
04/23/2024 - Dr. Stephanie Harmon obtained her Ph.D. in medical physics at the University of Wisconsin–Madison and did her postgraduate training at Leidos Biomedical Research where she worked within the Molecular Imaging Read More...
Web Page
Bioinformatics
04/04/2024 - Although generative artificial intelligence (AI), a’la ChatGPT, is receiving a lot of “attention” these days, there are many other options for using AI to support biomedical research. In order to help analyze and Read More...
Web Page
Bioinformatics
03/29/2024 - This first of five webinars will introduce NIH’s All of Us Research Program, including the program’s mission and core values. Learn about the current size and diversity of Read More...
Web Page
Bioinformatics
03/27/2024 - This half-day, virtual workshop features representatives from NCI cancer data cloud resources, including the NCI Cancer Research Data Commons (CRDC), Institute for Systems Biology Cancer Gateway in the Read More...
Web Page
Bioinformatics
03/13/2024 - Dear Colleagues, UCSC Xena is a web-based visual integration and exploration tool for multi-omic data and associated clinical and phenotypic annotations. Xena showcases seminal cancer genomics datasets from Read More...
Web Page
Bioinformatics
03/11/2024 - The goal of this exploratory workshop is to identify scientific and collaborative bridges between the communities of mathematical theory development and computational cancer biology research by bringing together mathematical theorists and cancer biologists from Read More...
Web Page
Bioinformatics
03/06/2024 - The National Institutes of Health (NIH) promotes the use of Common Data Elements (CDEs) to standardize data collection, sharing, and interoperability in health and disease research. In line with Congressional Appropriations language, the Office Read More...
Web Page
Bioinformatics
The Bioinformatics Training and Education Program is happy to announce open office hours. The BTEP team will be available virtually via Microsoft Teams to help you with your bioinformatics questions / problems from 1 PM to 3 PM , Read More...
Web Page
Bioinformatics
01/10/2024 - Our series of talks continues next month with two 20-minute presentations focused on single cell genomics studies in the model organism zebrafish. There will be light refreshments and we encourage attendees to Read More...
Web Page
Bioinformatics
11/30/2023 - Greetings, NCI intramural researchers, Earlier this year we reached out to gather your input on the formation of a bioinformatics community within the NCI Intramural Research Program. Why create such Read More...
Web Page
Bioinformatics
11/29/2023 - Join us for the upcoming CCR Fellows & Young Investigators-Seminar Series (CCR FYI-SS 2023/2024) which is being held as a ‘virtual’ seminar that is open to everyone! & Read More...
Web Page
Bioinformatics
10/03/2023 - Presented as part of the Sequencing Strategies for Population and Cancer Epidemiology Studies (SeqSPACE) Webinar Series Dr. Kushal Dey is an Assistant Member and Josie Robertson Investigator in the Department of Computational and Systems Read More...
Web Page
Bioinformatics
09/21/2023 - Picture this… You have large amounts of siloed medical imaging data, but you don’t have the time or budget to manually prepare the images and datasets for annotation and analysis. Don’t you Read More...
Web Page
CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More New NIH Resource Spotlight The NIH Lab Managers Working Group have developed a new NIH-wide database of cold Read More...
Web Page
CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Research Festival The NIH Research Festival highlights the groundbreaking science and the vibrant NIH community driving our Read More...
Web Page
September 8, 2022 crex.nih.gov CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Science & Technology Seminars and Training Events Upcoming Seminars and Educational Opportunities The following Read More...
Web Page
CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More. New Resources on CREx NIMH Human Brain Collection Core (HBCC) The HBCC obtains human brain tissue, hair, and blood Read More...
Frederick, MD
Collaborative
The Molecular Targets Program (MTP) is an organizational entity within the Center for Cancer Research (CCR) at NCI. The MTP provides the focus and infrastructure to enable CCR tenured and tenure-track Principal Investigators to initiate Read More...
Bethesda, MD
Trans NIH Facility
The NIH MRI Research Facility (NMRF) is a shared, intramural resource for human imaging studies. The NMRF is supported by all Institutes at NIH and reports to the Shared Resources Subcommittee (SRS) of the Scientific Read More...
Web Page
The Antibody Engineering Program (AEP) is part of the Center for Cancer Research (CCR) at the National Cancer Institute (NCI). The program focuses on generating therapeutic antibodies by phage display technology, including human antibodies and Read More...
Bethesda, MD
Trans NIH Facility
NIH Intramural CryoEM Consortium (NICE) serves intramural investigators in all NIH IC’s. NICE provides access to state-of-the-art Titan Krios cryo-electron microscopes for atomic-resolution structure determination of protein, macromolecular complexes, membrane receptors, cellular organelles, and Read More...
Web Page
September 8, 2022 crex.nih.gov CREx Monthly Newsletter Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More Science & Technology Seminars and Training Events Upcoming Seminars and Educational Opportunities The following Read More...
Frederick, MD
Core Facility
The Advanced Biomedical Computational Sciences (ABCS) group provides technology development, scientific consultation, collaboration and training, research, software development, and high-performance computing support. ABCS encompasses specialized groups focusing on machine learning applied to the interpretation of 2 Read More...
Web Page
CREx News & Updates September 2021 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Collaborative Research Exchange (CREx) News Site Spotlight FACILITY HIGLIGHTS Learn more about services from the CCR Read More...
Poolesville, MD
Core Facility
Trans NIH Facility
The NIA Nonhuman Primate (NHP) Core Facility maintains a colony of rhesus macaques at the National Institutes of Health Animal Center. Established in 2012, the Core's mission is to offer research services supporting multi-disciplinary translational aging Read More...
Bethesda, MD
Core Facility
The LCBG Microscopy Core offers imaging technologies and training. The Core has established instrumentation for for 2D and 3D imaging of both fixed and living specimens.
Frederick, Maryland
Core Facility
Repositories
The Biological Products Core provides the AIDS research community with high-quality purified preparations of various strains of Human Immunodeficiency Virus (HIV) and Simian Immunodeficiency Virus (SIV), economically prepared by leveraging the economy of scale. Materials Read More...
Bethesda, Maryland
Collaborative
Radiation Oncology Branch is part of CCR. Bioinformatics core is a collaborative resource to support ROB branch and provide service to ROB investigators from NCI and other Institutes access to new technologies, bioinformatics, statistical analysis Read More...
Bethesda, MD
Collaborative
The Antibody Engineering Program (AEP) is located at the Laboratory of Molecular Biology, which is part of the Center for Cancer Research (CCR), an intramural program at the National Cancer Institute (NCI). AEP focuses on Read More...
Web Page
The OSTR offers cutting-edge technology platforms to the CCR scientific community through centralized facilities. The videos accessed through this page are designed to introduce the various scientific methodologies OSTR makes available through the cores on Read More...
Frederick, MD
Core Facility
OMAL focuses its research and development activities to quantitatively understand the molecular basis of three-dimensional (3D) cell organization, motility, invasion, and differentiation using fixed samples and live, 3D tissue culture models (i.e., translational models). Read More...
Web Page
Back Services: Biophysics Facility offers fluorometers as open-access instruments. First-time users must complete a short training session before gaining access to the instrument reservation calendar. Location: Building 50, room 3226 Description: Some substances reemit light after Read More...
Bethesda, MD
Core Facility
The Flow Cytometry Core (LGI) offers established technologies to support studies using flow cytometry and cell sorting. Established Technologies Applications that run on FACS Caliburs include: Immunophenotyping (up to 4-color), Intracellular markers, including cytokines and Read More...
Rockville, MD
Trans NIH Facility
The Chemistry and Synthesis Center (CSC) of the National Heart, Lung, and Blood Institute (NHLBI) provides IRP scientists with targeted imaging probes and chemical tools that help accelerate cell-based assays, in vivo imaging studies, and Read More...
Bethesda, MD
Trans NIH Facility
The NIH Center for Human Immunology, Inflammation, and Autoimmunity (CHI) is a trans-NIH resource whose mission is to provide a collaborative hub of advanced translational immunology for NIH clinical and pre-clinical studies. This uniquely structured Read More...
Web Page
CREx News & Updates October 2021 Learn about the NIH Collaborative Research Exchange (CREx), Core Facilities, Webinars, & More NIH Collaborative Research Exchange (CREx) News Site Spotlight FACILITY HIGLIGHTS Learn more about services from the CPTR Read More...
Bethesda, MD
Collaborative
The Spatial Imaging Technology Resource (formerly the Nanoscale Protein Analysis Section of the Collaborative Protein Technology Resource or CPTR) provides expertise and service in state-of-the-art protein analysis technologies to advance CCR research in basic discovery Read More...
Web Page
[tabby title="Home"] About NICE-NIH Intramural CryoEM Consortium NIH Intramural CryoEM Consortium (NICE) serves intramural investigators in all NIH IC’s. NICE provides access to state-of-the-art Titan Krios cryo-electron microscopes for atomic-resolution structure determination of Read More...
Web Page
Bioinformatics
Listed below are the video recordings of past BTEP events (classes, seminars, workshops). Videos are hosted on various servers and may play slightly differently. Some videos may be downloaded for local viewing. Recorded Videos of Read More...
Web Page
Bioinformatics
This archive contains past and present issues of the BTEP BioInformatics Bulletin. The BTEP Bioinformatics Bulletin features select upcoming bioinformatics events offered across NIH and is distributed monthly via email to the Center Read More...
Web Page
Bioinformatics
The computational chemistry and protein modeling team in the Advanced Biomedical Computational Science (ABCS) group provides novel solutions in structural modeling and computational chemistry. Computational scientists in the group collaborate with NCI researchers by using Read More...
Web Page
Bioinformatics
What is bioinformatics? Bioinformatics integrates biology, statistics, and computer science to develop and apply theory, methods, and tools for the collection, storage, and analysis of biological and related data. Bioinformatics plays a critical role in Read More...
Web Page
Bioinformatics
Here, we will start with the data stored in a Seurat object. For instructions on data import and creating the object, see an Introduction to scRNA-Seq with R (Seurat) and Getting Started with Seurat: QC Read More...
Web Page
Bioinformatics
1. Introduction and Learning Objectives This tutorial has been designed to demonstrate common secondary analysis steps in a scRNA-Seq workflow. We will start with a merged Seurat Object with multiple data layers representing multiple samples that Read More...
Web Page
Bioinformatics
Objectives To explore Bioconductor, a repository for R packages related to biological data analysis. To learn about options for report generation with R: RMarkdown and Quarto. Introducing Bioconductor Bioconductor is both an open source project Read More...
Web Page
Bioinformatics
01/19/2024 - Trey Ideker, Ph.D., is a professor of medicine, bioengineering, and computer science, and former chief of genetics at the University of California San Diego (UCSD). Additionally, he is director or co-director of the Read More...
Web Page
Bioinformatics
Lesson 7: Course Wrap-Up Learning Objectives Introduce the QIIME2 microbiome workflow for Biowulf Review key concepts Showcase additional plugins QIIME 2 on Biowulf As mentioned previously, QIIME 2 is installed on Biowulf. To see available versions use module Read More...
Web Page
Bioinformatics
Objectives To explore Bioconductor, a repository for R packages related to biological data analysis. To better understand S4 objects as they relate to the Bioconductor core infrastructure. To learn more about a popular Bioconductor S4 Read More...
Web Page
Bioinformatics
09/06/2023 - With the advancements in single cell and spatial profiling technologies and methods, some of us thought it would be helpful to re-establish a community of end users on campus. We invite those that are Read More...