Search Results for: nih

06/26/2024 - This in-person hands-on workshop will introduce the Ingenuity Pathway Analysis (IPA), which is  available to access from the NIH Library . IPA can be used identify biological relationships, mechanisms, pathways, functions, and diseases Read More...

If you need help with Biowulf, the NIH HPC systems are well-documented at hpc.nih.gov . The User guides , Training documentation , and How To docs are also fantastic resources for getting help with most HPC Read More...

The NIH Library provides expert guidance on bioinformatics, biostatistics, data visualization, and data curation throughout the research process. Explore a variety of classes, on-demand trainings, resources, and services related to data science and bioinformatics available Read More...

05/17/2024 - The NIH Artificial Intelligence (AI) Symposium will take place on Friday, May 17th, 2024, in Masur Auditorium in Building 10 on the Bethesda NIH campus. This event is open to all NIH members - registration and Read More...

The Bioinformatics Training and Education Program is pleased to announce the Artificial Intelligence in Biomedical Research at NIH Seminar Series . Starting on Feb 29, these monthly events will be recorded and made available in the BTEP Read More...

09/19/2023 - This workshop is part of the  2023 NIH Research Festival  schedule . Data Sharing in Generalist Repositories  Generalist repositories offer NIH researchers a flexible, trusted resource to share data for Read More...

09/19/2023 - The NIH is home to a number of groups aimed at supporting bioinformatics, genomics, computational biology and various related topics. Many of these groups meet regularly to host talks or provide training opportunities, while Read More...

09/18/2023 - The NIH is home to a number of groups aimed at supporting bioinformatics, genomics, computational biology and various related topics. Many of these groups meet regularly to host talks or provide training opportunities, while Read More...

09/13/2023 - For inquires send email to staff@hpc.nih.gov Next edition of the NIH HPC monthly Zoom-In Consults! All Biowulf users, and all those interested in using the systems, are invited to stop by Read More...

08/07/2023 - This session will address key requirements of the NIH Genomic Data Sharing (GDS) Policy and implementation within the NIH IRP. It will also include discussion about harmonization of the GDS Policy with the NIH Read More...

The NIH HPC systems are well-documented at hpc.nih.gov . The User guides , Training documentation , and How To docs are fantastic resources for getting help with most HPC tasks.

Effective January 25, 2023, the NIH released the 2023 NIH Data Management and Sharing Policy . This policy requires that NIH intramural researchers plan for data management and sharing prior to conducting scientific research. To do this, scientists are Read More...

If you do not already have a Biowulf account, you can obtain one by following the instructions here . NIH HPC accounts are available to all NIH employees and contractors listed in the NIH Enterprise Directory. Read More...

The NIH HPC systems are well-documented at hpc.nih.gov . User guides Training documentation How To docs

Bioinformatics Calendar View Options The BTEP Bioinformatics Calendar contains listings for bioinformatics-related webinars and training opportunities offered across the NIH. These offerings are from many different ICs. If you wish to have an event listed Read More...

09/14/2022 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

09/12/2022 - We welcome members of the NIH to join us for a seminar event, covering multiplexed, direct digital gene expression profiling applications utilizing NanoString nCounter expression profiling technology as well as spatial biology discoveries generated Read More...

03/08/2022 - Are you interested in growing your data science skills or connecting with like-minded practitioners at NCI? Join us on  March 8, 3:00 pm – 4:00 pm ET  for a seminar on data science resources available to NCI staff!  Read More...

03/12/2021 - Register now at https://nih.webex.com/nih/onstage/g.php?MTID=e8b0c0c0e7a6b9c4d221051fb038e4e59 . This seminar is open to the public, so please feel Read More...

01/08/2021 - Abstract: The NIH Science and Technology Research Infrastructure for Discovery, Experimentation, and Sustainability (STRIDES) Initiative allows NIH to explore the use of cloud environments to streamline NIH data use by partnering with commercial providers. Read More...

To obtain an NIH wide license, users will need to: Obtain an NIH HPC account. Register for an account through the NIH Library. Reserve a remote NIH Library workstation online. See the NIH Library website Read More...

The NIH HPC systems are well-documented at hpc.nih.gov. User guides Training documentation How To docs Note Existing safeguards make it nearly impossible for individual Biowulf users to irreparably mess up the system for Read More...

The NIH HPC systems are well-documented at hpc.nih.gov. User guides Training documentation How To docs Note Existing safeguards make it nearly impossible for individual Biowulf users to irreparably mess up the system for Read More...

The NIH Library provides resources and guidance on bioinformatics, biostatistics, data visualization, and data curation. Check the NIH Library Training and Events Calendar to find upcoming virtual and in-person classes related to data science and Read More...

If you do not already have a Biowulf account, you can obtain one by following the instructions here. NIH HPC accounts are available to all NIH employees and contractors listed in the NIH Enterprise Directory. Read More...

If you do not already have a Biowulf account, you can obtain one by following the instructions here. NIH HPC accounts are available to all NIH employees and contractors listed in the NIH Enterprise Directory. Read More...

The NIH Bioinformatics Training Calendar contains descriptions and links to bioinformatics training events and talks on related topics from all over the NIH campus, not just BTEP sponsored events.

Image Credit: hpc.nih.gov/systems This diagram describes the NIH HPC Systems (Login node, Biowulf Cluster, HPC drive, and Helix), how the systems interact, and how you interact with the systems. Each "system& Read More...

Image Credit: hpc.nih.gov/systems This diagram describes the NIH HPC Systems (Login node, Biowulf Cluster, HPC drive, and Helix), how the systems interact, and how you interact with the systems. Each "system& Read More...

Much of the content for this presentation is from hpc.nih.gov. For more information and more detailed training documentation, see hpc.nih.gov/training/. Note This lesson will be demo-based only. Hands-on lessons will Read More...

Much of the content for this presentation is from hpc.nih.gov. For more information and more detailed training documentation, see hpc.nih.gov/training/. Note This lesson will be demo-based only. Hands-on lessons will Read More...

NIH HPC Open OnDemand provides an online dashboard for users to easily access command line interactive sessions, graphical linux desktop environments, and interactive applications including RStudio, MATLAB, IGV, iDEP, VS Code, and Jupyter Notebook. To Read More...

Note "NIH GitHub is an approved solution for NIH investigators, engineers, and developers who rely on versioning and source control to securely store and share code, collaborate effectively inside and outside the NIH,publish Read More...

NIH encourages data management and sharing practices to be consistent with the FAIR (Findable, Accessible, Interoperable, and Reusable) data principles. ---sharing.nih.gov The fair principles not only apply to data but also the algorithms, Read More...

NIH encourages data management and sharing practices to be consistent with the FAIR (Findable, Accessible, Interoperable, and Reusable) data principles. ---sharing.nih.gov The fair principles not only apply to data but also the algorithms, Read More...

Simplify your developer workflow using Git NIH ONLY Organizing and documenting NGS pipelines on GitHub NIH ONLY

This session of the BTEP Coding Club featured guest speaker Jonathan Goodson, Ph.D., a Computational Scientist with High Performance Computing in the Office of Scientific Computing in the NIH Center for Information Technology. Jonathan Read More...

The Helix/Biowulf system is an invaluable resource for the CCR bioinformatics community. Not only does is provide access to state of the art hardware, with huge computing capacity, but the systems also host a Read More...

07/17/2025 - NIDDK Biostats Seminar Series: From Research Study Design to Collecting, Managing, and Analyzing Data. Learning Objectives 1. The learner should know the difference between observational studies, clinical trials (drug and non-drug studies), and secondary data ( Read More...

05/16/2025 - This one-day in-person NIH AI Symposium will bring together researchers from a broad range of disciplines to share their AI-related research, with the goal of disseminating the newest AI research, providing an opportunity to Read More...

Anaconda ( https://www.anaconda.com/ ) is a package manager and distributor for a wide array of data science software. Package managers are ideal for scientists who conduct analysis on a personal computer as they eliminate Read More...

04/16/2025 - Please email staff@hpc.nih.gov for the meeting link. All Biowulf users, and all those interested in using the systems, are invited to call in to our Virtual Walk-in Consult to discuss problems Read More...

03/26/2025 - This session of the BTEP Coding Club will showcase NIH HPC OnDemand, a new interface for on-demand access to HPC resources via a web browser. HPC OnDemand simplifies access to graphical sessions and GUI Read More...

Register now for an upcoming seminar on January 22, 2025 , “Revealing Tumor-Promoting Signals in Breast Cancer Subtypes: A NIDAP Analysis of Single-Cell Data” . This one-hour talk will feature guest speaker and NIDAP developer, Josh Meyer, who will Read More...

09/23/2024 - Come to the Fair!  In the morning session, several different groups will speak about their training and education programs. The afternoon session will be devoted to learning about research using AI across Read More...

09/18/2024 - Frederick National Laboratory Science and Technology Group: Work in Progress Seminar Series presents:  “Modernization of Next Generation Sequencing Big Data Analysis Pipelines Leveraging NIH’s on-prem High Performance Computing Cluster … and Cloud.” Meeting ID: 225 592 603 654  Read More...

08/07/2024 -  Generalist repositories are a flexible, trusted resource for sharing research data for which there is no appropriate discipline specific repository as well as many other research outputs valuable for reproducibility and open Read More...

07/24/2024 - Partek Flow enables scientists to construct analysis workflows for multi-omics sequencing data including DNA, bulk and single cell RNA, spatial transcriptomics, ATAC and ChIP. It is hosted on Biowulf, the NIH high performance computing Read More...

06/11/2024 - Large language models (LLMs) are artificial intelligence (AI) algorithms that employ deep learning and extensive data sets to create new content. LLMs offer many possible applications in the biomedical field, such as the development Read More...

04/26/2024 - Webinar attendees will hear tips and tricks to code efficiently in the Researcher Workbench using R and RStudio. Although Python and SAS are alternative programming languages available on the Researcher Workbench, this session will Read More...

04/19/2024 - In this webinar, attendees will learn the basics of using the All of Us Researcher Workbench’s point-and-click research tools, including how to create a workspace, how to build a cohort of All of Read More...

04/12/2024 - This session will outline the All of Us Researcher Workbench registration process for NIH researchers. Access to the Researcher Workbench is free, and all registered researchers are provided $300 initial computational credits. Some analyses in Read More...

03/29/2024 - This first of five webinars will introduce NIH’s All of Us Research Program, including the program’s mission and core values. Learn about the current size and diversity of Read More...

03/05/2024 - This in-person workshop will show participants how to identify cell types based on statistics, visualization, and canonical markers. One Peripheral blood mononuclear cells (PBMCs) sample will be used to illustrate a basic Single Cell Read More...

Accessing Partek Flow at NIH and tips for data transfer Learning objectives After consulting this guide, participants will Know how to access Partek Flow at NIH. Be able to transfer data from NCI CCR Sequencing Read More...

To access the NIH Partek Flow server, go to https://partekflow.cit.nih.gov/flow and enter the user's NIH username and then password. Note User may have selected a password different than that Read More...

Accessing Partek Flow at NIH and tips for data transfer Learning objectives Instructions for accessing Partek Flow NCI researchers can find instructions for accessing Partek Flow at https://bioinformatics.ccr.cancer.gov/btep/partek-flow-bulk-and-single-cell-rna-seq-data-analysis/ . But Read More...

12/07/2023 - This hands-on workshop will introduce the Ingenuity Pathway Analysis (IPA) and CLC Genomics Workbench tools, which are available to access from the NIH Library. IPA can be used identify biological relationships, mechanisms, pathways, functions, Read More...

12/06/2023 - NIDAP, the NIH Integrated Data Analysis Platform, is a cloud-based and collaborative data aggregation and analysis platform. The NIDAP platform hosts user-friendly bioinformatics workflows (Bulk RNA-Seq, scRNA-Seq, Digital Spatial Profiling) and other component analysis Read More...

You will need: active, unlocked Biowulf account (hpc.nih.gov) active Globus account for transferring files OR set up a file transfer program ( Filezilla ) for Mac or WinSCP for Windows PC. program to establish a Read More...

Learning Objectives Understand the components of an HPC system. How does this compare to your local desktop? Learn about Biowulf, the NIH HPC cluster. Learn about the command line interface and resources for learning. What Read More...

07/11/2023 - Attendees will learn about high performance computing (HPC) with the NIH cluster Biowulf. This resource contains hundreds of open source bioinformatics tools and biological databases. Participants will understand why it's important to be Read More...

05/17/2023 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

04/14/2023 - This seminar will introduce the NIH Comparative Genomics Resource (CGR), an NIH-funded, multi-year NLM project to establish an ecosystem to facilitate reliable comparative genomics analyses for all eukaryotic organisms in collaboration with the genomics Read More...

04/12/2023 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

01/18/2023 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

11/10/2022 - Learn how to include generalist repositories in data sharing plans as part of your preparation for the new NIH Data Management and Sharing Policy beginning in January 2023. This webinar will include guidance on selecting Read More...

11/01/2022 - Join us to learn how Visium Spatial and Xenium In Situ platforms from 10x Genomics can help you push the boundaries of your research. Uncover molecular insights, dissect cell-type differences, investigate the adaptive immune Read More...

09/29/2022 - Please plan to attend the Physician-Scientist Early Investigator Program (PEIP) seminar by: Jay Ronquillo, M.D. Center for Biomedical Informatics and Information Technology, NCI Dr. Ronquillo is an NIH Data and Technology Advancement (DATA) Read More...

05/18/2022 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

04/13/2022 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

01/19/2022 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

03/16/2021 - Register/Join Susan Gregurick, Ph.D. , associate director for data science and director of the Office of Data Science Strategy, will deliver the March lecture at the “Women Leaders in Academic Research” series hosted Read More...

02/10/2021 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

01/13/2021 - All Biowulf users, and all those interested in using the systems, are invited to stop by our Zoom session to discuss problems and concerns, from scripting problems to node allocation, to strategies for a Read More...

12/01/2020 - Please Register to join us for a virtual workshop focused on defining the major challenges and promising new approaches for creating, curating, integrating, and querying across ultra-large chemistry databases. This event is a Three Read More...

03/13/2020 - On Friday, March 13, NIH’s Office of Data Science Strategy will host “Friday Before Pi Day,” a Friday-the-13th-inspired Pi Day celebration highlighting data science at NIH. The day’s events will include two Read More...

NIH Bioinformatics Calendar, sponsored by the NCI CCR Bioinformatics Training and Education Program (BTEP), contains information on all bioinformatics (and some data science) trainings/ presentations/ classes offered on the NIH campus. BTEP Distinguished Speakers Seminar Read More...

Biowulf (HPC OnDemand is recommended). Use Python locally on government furnished personal computer via NIH Anaconda Professional License. This will require users to install Anaconda to local computer. See BTEP's Topic Spotlight on NIH' Read More...

Go to https://www.globus.org and click on "Globus Account Log In" found in the upper right corner of the screen. Type in "National Institues of Health" in the box. Read More...

License type: NIH wide https://bioinformatics.ccr.cancer.gov/btep/training/nidap-training/nidap-workflows/

NIDAP is an innovative, cloud-based, collaborative data aggregation and analysis platform that hosts user-friendly bioinformatics workflows and component analysis and visualization tools developed by the NCI developer community based on open source tools and makes Read More...

While Dataquest licenses will no longer be available after September 15, 2025 , the National Institutes of Health (NIH) offers a unique opportunity for self-directed learning through its Coursera Learning Program . This initiative provides anyone with an NIH Read More...

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The AgingResearchBiobank was officially launched in January 2019 with a mission to provide a state-of-the-art inventory system for the storage, maintenance, and distribution of de-identified biospecimens and associated phenotypic, clinical, and imaging data from numerous NIA-funded Read More...

With specimens that span neurological, neuropsychiatric, and neurodevelopmental diseases and disorders, the NBB serves as a central point of access to the world-class collections of our six biorepositories. In addition, the NBB provides researchers with Read More...

The Stem Cell Unit (SCU) has established a database to which hESC lines, adult stem cells and induced pluripotent stem (iPS) cells may be directly compared. These data give scientists the information they need when Read More...

The NIH Biowulf Cluster provides researchers with a world-class system to assist in solving complex biomedical problems as diverse as gene variation in worldwide human populations, deep learning to model protein structures, and PET brain Read More...

The NIH MRI Research Facility (NMRF) is a shared, intramural resource for human imaging studies. The NMRF is supported by all Institutes at NIH and reports to the Shared Resources Subcommittee (SRS) of the Scientific Read More...

The Mouse Imaging Facility (MIF) is a shared, trans-NIH intramural resource for animal imaging studies. MIF provides access to state-of-the-art radiological imaging methods optimized for mice, rats, other animals, and tissue samples. MIF provides intellectual, Read More...

NISC’s role within NHGRI, and more broadly across NIH, aims to advance genome sequencing and its many applications, with a goal not simply to produce sequence data, but to produce the infrastructure required to Read More...

NIH Intramural CryoEM Consortium (NICE) serves intramural investigators in all NIH IC’s. NICE provides access to state-of-the-art Titan Krios cryo-electron microscopes for atomic-resolution structure determination of protein, macromolecular complexes, membrane receptors, cellular organelles, and Read More...

The Division of Veterinary Resources’ (DVR) mission is to contribute to the advancement of NIH biomedical research programs by providing excellence in animal care, customer service, and specialized research services to support intramural research efforts. Read More...

The Department of Laboratory Medicine provides state-of-the-art laboratory testing in support of Clinical Center patient care and will serve as a center of excellence in research and training in laboratory medicine, particularly in areas which Read More...

MAB provides visual communication solutions across all media to the entire NIH community. Our Medical Illustration section provides a complete range of biomedical visualization services, including manuscript/textbook figures, infographics, 3D modeling, animation, technical diagrams, Read More...

The NIH Library is a biomedical research library, whose collection and services are available at no cost to NIH staff: Electronic Resources: Over 20,000 electronic journals, 190,000 eBooks, and 50 databases. , Training classes covering topics such as bioinformatics, Read More...

The PET Department, CC, functions as a core facility that supports basic, translational, and clinical research using PET. It is a vertically integrated facility, with resources to produce positron-emitting radionuclides, manufacture PET radiopharmaceuticals in a Read More...

The Neurorehabilitation and Biomechanics Research Section (also referred to as the NAB LAB) is a multidisciplinary group of highly qualified scientists, clinical and technical staff, and trainees with diverse backgrounds including medical, physical therapy, neuroscience Read More...

The NIH Center for Human Immunology, Inflammation, and Autoimmunity (CHI) is a trans-NIH resource whose mission is to provide a collaborative hub of advanced translational immunology for NIH clinical and pre-clinical studies. This uniquely structured Read More...

The Division of Veterinary Resources Animal Surgery has supported large animal research and clinical care for more than 40 years. DVR surgeons provide outstanding and highly specialized large animal (rabbits, ungulates, etc.) research support in a Read More...

The Pathology Service, Division of Veterinary Resources (DVR), Office of Research Services (ORS), provides diagnostic gross and histopathologic evaluation of any species of laboratory animals used in the NIH Intramural Research Program due to morbidity, Read More...

The National Institutes of Health (NIH) Office of Research Services (ORS) Division of Radiation Safety (DRS) Radioactive Materials Control and Analysis Branch supports radioactive materials packaging/shipping. Established Technologies In accordance with Department of Transportation ( Read More...

The facilities at AIM are available for use by the entire NIH intramural research community. While we welcome users with any size imaging project, AIM specializes in large, yearlong (or longer), collaborative research efforts with Read More...

In support of Intramural Research Program (IRP) scientists, DOHS provides training, consulting, and resources to ensure that workers' risk to hazards and stresses in the laboratory environment is minimized. Our services include one-on-one consultation with Read More...

In support of Intramural Research Program (IRP) scientists, DOHS provides training, consulting, and resources to ensure that laboratory equipment is used and maintained properly and safely. We provide expert safety and health consulting support for Read More...

The Metabolic Clinical Research Unit (MCRU) opened in 2007 as a key component of the Strategic Plan for NIH Obesity Research . The NIDDK worked closely with the Clinical Center to design the Unit, which houses state-of-the-art Read More...

The Clinical Image Processing Service (CIPS) offers timely and accurate advanced image processing of diagnostic radiology images for clinical care, research, and training. CIPS’ functions include clinical services and scientific researches. Established Technologies: CIPS can Read More...

Radiology and Imaging Sciences provides imaging services for National Institutes of Health (NIH) Clinical Center patients participating in research protocols conducted by the various NIH institutes. Services include X-rays, fluoroscopy, ultrasound, magnetic resonance imaging (MRI) Read More...

The NIH Clinical Center Pharmacy Department provides pharmaceutical care to inpatients and outpatients on NIH intramural research protocols at the NIH Clinical Center. The Clinical Center facility encompasses 200 inpatient beds, 93 day-hospital stations, and 15 clinics. Clinical Read More...

The Center of Cellular Engineering (CCE) is a comprehensive facility that develops and manufactures a wide range of cell and gene therapies for early phase clinical trials. The CCE is currently manufacturing chimeric antigen receptor ( Read More...

[tabby title="Home"] About NICE-NIH Intramural CryoEM Consortium  NIH Intramural CryoEM Consortium (NICE) serves intramural investigators in all NIH IC’s. NICE provides access to state-of-the-art Titan Krios cryo-electron microscopes for atomic-resolution structure determination of Read More...

The Trans-NIH Metabolomics Core (TNMC) is a shared research resource that performs metabolomics analysis (and related small molecule research) for investigators at all Institutes and Centers across the NIH Intramural Research Program. The TNMC is Read More...

The NIH Intramural Research Program Collaborative Research Exchange (CREx) The Collaborative Research Exchange (CREx) is an online CCR marketplace where investigators can search, browse, and request information for research services, technologies, or custom products (antibody Read More...

CREx is an easy-to-use platform that catalogues research resources available across the NIH. It also includes an expansive database of services offered by the biotechnology industry. All resources are organized by research areas and keywords Read More...

2024 Senatorov IS, Bowman J, Jansson KJ, Alilin AN, Capaldo BJ, Lake R, Riba M, Abbey YC, Mcknight C, Zhang X, Raj S, Beshiri ML, Shinn P, Ngyuyen H, Thomas CJ, Corey E, Kelly K. Castrate Read More...

10/21/2020 - Register Data preprocessing and compound identification are two important steps for making sense of mass spectrometry-based untargeted metabolomics data. In this webinar, Dr. Xiuxia Du will demonstrate the software tool “ADAP” and the online Read More...

Presented by Joe Wu, PhD (BTEP) July 24, 2024 ncibtep@nih.gov

Submit a job using sbatch . Submit a multi-threaded job. Sumbit a swarm job.

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2024 Kim G, Chen Z, Li J, Luo J, Castro-Martinez F, Wisniewski J, Cui K, Wang Y, Sun J, Ren X, Crawford SE, Becerra SP, Zhu J, Liu T, Wang S, Zhao K, Wu Read More...

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2025 Sebastian R, Sun EG, Fedkenheuer M, Fu H, Jung S, Thakur BL, Redon CE, Pegoraro G, Tran AD, Gross JM, Mosavarpour S, Kusi NA, Ray A, Dhall A, Pongor LS, Casellas R, Aladjem MI. Mechanism Read More...

Training We recommend that users become familiar with the principals of fluorescence labeling and optical microscopy before arranging for training. We recommend the following sites for learning about microscopy: Introductions to Fluorescence Microscopy Fluorescence Labeling Read More...

2024 Mizunuma M, Redon CE, Saha LK, Tran AD, Dhall A, Sebastian R, Taniyama D, Kruhlak MJ, Reinhold WC, Takebe N, Pommier Y. Acetalax (Oxyphenisatin Acetate, NSC 59687) and Bisacodyl Cause Oncosis in Triple-Negative Breast Read More...

Sandeep Pallikkuth, Ph.D Staff Scientist sandeep.pallikkuth@nih.gov Itoro Akpan, M.S. Biologist akpanio@nih.gov

Research Mission The goal of OMAL’s research is to understand molecular mechanisms driving carcinogenesis and the reversal of this process through treatment, by utilization and advancement of optical microscopy techniques. These techniques include multiplex Read More...

BookIt The NCI Microscopy Core is using a new system to reserve a microscope. Use this link to access the BookIt software. Click on the NIH Login to sign in using your NIH PIV ID Read More...

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The Center for Inherited Disease Research (CIDR)'s  mission is to support the genetics community by providing high-quality, cutting-edge genomics services and technologies in order to expand our understanding of disease and catalyze discoveries that Read More...

The CHTN is a unique NCI-supported resource that provides human tissues and fluids from routine procedures to investigators who utilize human biospecimens in their research. Unlike tissue banks, the CHTN works prospectively with each investigator Read More...

The Bloomington Drosophila Stock Center (BDSC) collects, maintains, and distributes genetically defined strains of Drosophila melanogaster for research and education. The BDSC supports a large, worldwide community of scientists using Drosophila as a model organism Read More...

The Biomedical Engineering and Physical Science (BEPS) shared resource supports NIH’s intramural basic and clinical scientists on applications of engineering, physics, imaging, measurement, and analysis. BEPS is centrally located on the main NIH campus Read More...

DTP’s Natural Products Repository is the world’s largest storehouse of natural products. It houses close to >200,000 extracts from samples of more than 70,000 plants and >20,000 marine organisms collected from more than 29 countries, plus extracts Read More...

The NIA Nonhuman Primate (NHP) Core Facility maintains a colony of rhesus macaques at the National Institutes of Health Animal Center. Established in 2012, the Core's mission is to offer research services supporting multi-disciplinary translational aging Read More...

The Chemistry and Synthesis Center (CSC) of the National Heart, Lung, and Blood Institute (NHLBI) provides IRP scientists with targeted imaging probes and chemical tools that help accelerate cell-based assays, in vivo imaging studies, and Read More...

The Functional Genomics Laboratory (formerly, the RNAi Screening Facility) of the National Center for Advancing Translational Sciences (NCATS) assist investigators with all stages of project planning and execution, beginning with assay development through genome-wide siRNA Read More...

The NCI Cloud Resources are components of the NCI Cancer Research Data Commons (CRDC) that bring data and computational power together to enable cancer research and discovery. These cloud-based platforms eliminate the need for researchers Read More...

The Science and Technology Research Infrastructure for Discovery, Experimentation, and Sustainability (STRIDES) Initiative The STRIDES Initiative aims to help NIH and its institutes, centers, and offices (ICOs) accelerate biomedical research by reducing barriers in utilizing Read More...

The Specimen Resource Locator (SRL) is a biospecimen resource database designed to help researchers locate resources that may have the samples needed for their investigational use. This publicly searchable database includes information about biospecimen banks Read More...

The goals of the Bioinformatics Training and Education Program within NCI/CCR are: To make researchers aware of the bioinformatics resources available to them, To provide training and guidance on these resources regularly and at Read More...

The National Clinical Trials Network Biospecimen Banks (NCTN) receive, store, and distribute human cancer biospecimens collected on NCTN clinical trials . NCTN Biobanks provide cancer researchers with quality, well-annotated biospecimens and associated clinical information. The NCTN Read More...

The NCI Genomic Data Commons (GDC) was established by the NCI Center for Cancer Genomics (CCG) to support the receipt, harmonization, distribution, and analysis of genomic and clinical data from cancer research programs. The GDC Read More...

The Mouse Metabolic Phenotyping Center (MMPC)Live Program provides standardized, high quality, unique, and hard to find phenotyping services for mouse models of diabetes, obesity, and related metabolic disorders. Emerging as the next iteration of Read More...

HALO HALO is a powerful 2D image analysis tool with AI capabilities to perform annotations and analysis on bright-field and immunofluorescent images for digital pathology and numerous other applications.  It offers a set of algorithms Read More...

Our Mission The NCI Optical Microscopy Cores are instrumental in advancing cancer research through optical measurements and analysis. Serving the Center for Cancer Research community, which is home to approximately 250 Principal and Senior Investigators across 50 Read More...

Ross Lake, B.A.Core Headlaker@mail.nih.govBuilding 37, Room 1066240-760-6824 Ross Lake joined the Microscopy Core of the Laboratory of Genitourinary Cancer Pathogenesis (LGCP) in 2003. He became the Core Head of the Core Read More...

Training Contact the LCBG Microscopy Core to discuss your experiment: Meet with Ross Lake, Core Head, to discuss your specific project. If the project is feasible, schedule an appointment to receive training and use the Read More...

Click image below to access the BookIt software. Click on the NIH Login to sign in using your NIH PIV ID card

Contact the LCBG Microscopy Core to discuss your experiment Please login to the Bookitlab with your NIH credentials and register as user. Once you have registered on the website, coordinate a Read More...

General Usage Policies Principal investigators should read this document and sign it. PI’s/postdocs should attach a short-written summary of the project to the signed doc. If the project changes, Read More...

Our Policy Guidelines: To use the Core please contact Sandeep Pallikkuth

Jan Wisniewski, Ph.D.Head of EIB Microscopy and Digital Imaging Facilitywisniewj@nih.govBuilding 10, Room 4A05240-858-3605 Dr Wisniewski received his Ph.D. from the Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Read More...

Gianluca Pegoraro, PhD gianluca.pegoraro@nih.gov Facility Head 240-760-6696 Bldg. 41, Room B909 Dr. Pegoraro received his Ph.D. in Molecular Genetics from the International School of Superior Studies in Trieste, Italy in 2004. After Read More...

Gianluca Pegoraro, PhD gianluca.pegoraro@nih.gov Facility Head 240-760-6696 Bldg. 41, Room B909 Dr. Pegoraro received his Ph.D. in Molecular Genetics from the International School of Superior Studies in Trieste, Italy in 2004. After Read More...

Image Analysis Signals Imaging Artist Next generation image analysis and management platform for high-content screening and cell imaging data. Quickly process, analyze, share, and store the vast volumes of data. Cell Profiler CellProfiler is free, Read More...

A typical HTI screening project at HiTIF can be subdivided in 5 phases: Pre-Development The investigator contacts the Facility Head to inquire about the current availability of instrumentation time and manpower for the project to be Read More...

HiTIF Laboratory Policies

Image Analysis Capabilities: Custom Development Software Supported Software Platforms Arivis Vision 4D Arivis is software for image processing, analysis, and display for working with multi-channel 2D, 3D and 4D images of almost unlimited size independent Read More...

Our Team Michael Kruhlak, Ph.D.Core Headkruhlakm@nih.govBuilding 37, Room B114E240-858-3342 Dr. Kruhlak received his Ph.D. from the Department of Biochemistry and Molecular Biology at The University of Calgary Medical Read More...

Image Processing Capabilities: Please contact Michael Kruhlak if you have any questions regarding image analysis.

Contact the CCR Microscopy Core to discuss your experiment Thank you for your interest in using the CCR Microscopy Core. Please login to the Bookitlab with your NIH credentials and register Read More...

Chris Combs, Ph.D. Facility Head Address: Bldg. 10 Rm 6n-309 10 Center Dr Bethesda, MD 20892 combsc@nhlbi.nih.gov Phone: 301.480.4078 Tatiana Karpova, Ph.D. Facility Head Address: Bldg. 41 Rm C615 41 Center Dr Bethesda, MD 20892 Read More...

Optical Microscopy Core of the Experimental Immunology Branch (CCR/NCI) announces the introductory classes to Image J/FIJI: December 16th and 18th, 2020, 10 am to 4 pm with 1 hr break. Dr. Jan Wisniewski “Streamline Your Image Analysis: Read More...

2024 Date: Tuesday, October 15, 2024 Time and Location: 11 am EST, ZOOM (INVITATION BY LMIG LIST SERVER) Speaker: Dr. Diego Presman (U Buenos Aires) Title: “Insights on Glucocorticoid Receptor Activity Through Live Cell Imaging” Summary: Eucaryotic transcription factors ( Read More...

PLEASE, JOIN US AT LMIG ZOOM SEMINAR! DATE: Tuesday, January 14th, 2025 TIME AND LOCATION: 11 am EST, ZOOM (INVITATION BY LMIG LIST SERVER)Dr. Yun-Xing Wang (NIH/NCI) “Determining 3D structures of individual molecules in Read More...

PLEASE, JOIN US AT LMIG ZOOM SEMINAR! DATE: Tuesday, January 14th, 2025 TIME AND LOCATION: 11 am EST, ZOOM (INVITATION BY LMIG LIST SERVER) Dr. Yun-Xing Wang (NIH/NCI) “Determining 3D structures of individual Read More...

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How do I determine which EM technique should be used for my research? Schedule a free consultation with the Head of EML, Dr. Ru-ching Hsia, to discuss the aim of your research project. Dr.& Read More...

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